ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATGGGCGGAA
TTCTTTGTTCTGCCATGAGACCCATCTTTTAAGGGGGCTATTTGATTTTT
TATTAATTTTAAAAATTTATTTATTTTACATCCACACTGCAGCCCCCCTC
TATTTATAATCTATGAATTTAGCCTATATAAAACATTTCTAGCATCTATA
TGAACGACTTTAACATTTATAATTATATATACATGTAGGTGACTGTATTA
CTGTCTATTTTTTATTAATTTTAAAAATTTATTTATTTTACATCCACACT
GCAGTCCCCCTCTCTTTTTTTTGCACCTTCACAAGTCAATCCTCCCATAT
CGCTTTCCAATTCTCTGAGGAGAAGAGAAAACCCCTATGTGTACCAACAT
TTCTTAGCATATCAAGATGTACTAGGACTAAGCACATTATCTCTGACTGA
GACCAAGCAAGAAAGTCCAGTTAAGGGAAAGTGATCCAAAAGCAGACAAC
ATAGTCAAAGATAGCCCATGTTCCAATTGTTAGGGTATTCATAAGAATGG
CAACCTGCACATCTACTGTGAATATATAGGGGGCTTAGATTCAAACCTGA
GAGCTCTTTGGGTGGTGGGTCAGTCTCTGTGACCCCCCAAAAGTCCCAGG
TTATTTGACTCTGTCTGGCTTCCTGGGAAGGAATTGACATGTCCTGTTCC
CCCCACCCTTAACCCCCCCTTTTTCCAAAAACAAGAGGCCTACTTAAGGG
TGGGCATGGAN

GATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGA
AGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATC
AAAATAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACAC
TCCTCCATTGTTGGTGGGATTGCAAGCTGGTACAACCACTCTAGAAATCC
GTCTGGCGGTTCCTCAGATAATTGGACATAGTACTACCGGAGGATCCAGC
AATACCACTCCTGGGCATATATGTGAAGATGTTCCAACATGTAATAAGGG
TACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCT
GGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGG
TACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAAAGAAATTAT
GAAATTCCTACCCCCAGGGATGGACCTGGGAGGGGACCATCCTGGAGGAG
GGAATACATTCCCCAAGGAACTTCTCCCATAAGGGTCTTTCTGAAAAGGG
GAAATTTTTTCCTAACCCCTGGAAACCCTCAAATTATAAAAAAATTTTCT
TATTTCCGGGAATCTCAAAAAATAATAAACGACCGTGGGATTTGGCCCTT
CCCTCTACCGGGATAATAAATACCTT

Query= MSMg01no454_f23.b1 MSMg01no454_f23.b1 CHROMAT_FILE:
MSMg01no454_f23.b1 PHD_FILE: MSMg01no454_f23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:32 2005
         (462 letters)



>mm_chr4_96043991_96044852
          Length = 862

 Score =  777 bits (402), Expect = 0.0
 Identities = 431/446 (96%), Gaps = 11/446 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccatcttttaagggggctatttgattttttattaattttaaaaatttatttattttacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccatcttttaagggggctatttgattttttattaattttaaaaatttatttattttacat 382

                                                                       
Query: 61  ccacactgcagcccccctctatttataatctatgaatttagcctatataaaacatttcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccacactgcagcccccctctatttataatctatgaatttagcctatataaaacatttcta 322

                                                                       
Query: 121 gcatctatatgaacgactttaacatttataattatatatacatgtaggtgactgtattac 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcatctatatgaactactttaacatttataattatatatacatgtaggtgactgtattac 262

                                                                       
Query: 181 tgtctattttttattaattttaaaaatttatttattttacatccacactgcagtccccct 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtctattttttattaattttaaaattttatttattttacatccacactgcagtccccct 202

                                                                       
Query: 241 ctc----tttttt--ttgcaccttcacaagtcaatcctcccatatcgctttccaattctc 294
           |||         |  ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 ctcacca-----tagttgcaccttcacaagtcaatcctcccatatccctttccaattctc 147

                                                                       
Query: 295 tgaggagaagagaaaacccctatgtgtaccaacatttcttagcatatcaagatgtactag 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 tgaggagaagagaaaacccctatgtgtaccaacatttcttagcatatcaagatgtactag 87

                                                                       
Query: 355 gactaagcacattatctctgactgagaccaagcaagaaagtccagttaagggaaagtgat 414
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 86  gactaagcacattatctctgactgagaccaagcaaaaaagtccagttaagggaaagtgat 27

                                     
Query: 415 ccaaaagcagacaacatagtcaaaga 440
           ||||||||||||||||||||||||||
Sbjct: 26  ccaaaagcagacaacatagtcaaaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)