BAC Information

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BAC

Clone NameMSMg01-454G04
Chromosome4 (Build37)
Map Location 49,242,620 - 49,242,892
singlet/doubletsinglet
Overlap geneE130309F12Rik
Upstream geneTxndc4, Invs, Tex10, 5730528L13Rik, Tmeff1, 2310039E09Rik
Downstream geneLOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2, LOC666663
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454G04.T7 (MSMg01no454_g04.b1)MSMg01-454G04.TJ (MSMg01no454_g04.g1)
ACCAG541174AG541175
length761791
length of high quality
(start - end)
242 (74 - 315)274 (80 - 353)
definitionCHROMAT_FILE: MSMg01no454_g04.b1 PHD_FILE: MSMg01no454_g04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:33 2005CHROMAT_FILE: MSMg01no454_g04.g1 PHD_FILE: MSMg01no454_g04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXATCAGAGAGGAGCCG
CGGAATTCTCTGTTTCCATATTAGGGTCACTTATATATACTATCATATCA
TCTGCAAAAAGTGATATTTTGACTTCCTCTTTTCCAATTTGTATCCCCTT
GATATCCTTTTGTTGTCGAATTGCTCTGGCTAATACTTCAAGTACTATGT
TGAAAAGGTAGGGAGAAAGTGGGCAGCCTTGTCTAGTCCCTGATTTTAAT
GGGATTGCTTCCAGCTTCTCTCCATTTACTTTGATGTTGGCTACTGGTTT
GCTGTAGATTGCTATTATCATGTTTAGGTTGAGCCTTGAATTCCTGATCT
TTCCAAGACTTTTATCATGAAAGGATTTTGGATTTTGTCAAATGCTTTCT
CAGCATCTAGGAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATAT
ACTGGATTACGTTGATGGATTTCCCCATATCGAACCCTCATTGCCTCCCT
GGCACTGATTCCTATGTTTTTCATCATCGTACGCCCGTCTTTTATTTCCT
CCTTTTTTCTTCCCTTTCTTCCCTTTCTTCTTTTTTCTCTGTCTTTTCTC
TCCTCTCCTCCATTTTTCCTTTCAATTTCTTCTATCCCTTTTTCATTTCT
TACTTCTTTTTTCCCCCCTTTTTTTTCCCTCTCCCTTCTATTTTTTCCCC
CCCGCTACACCCCTTCTTTTCTTTCTTCTTCCACCATCTCCATTCCTTTT
TTTATTCCTTN
NAGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTTAGGATTATAAAACCAA
AAATTTAATACATTTTTTTTCTTAACAATTGCTTTAAATTGGGGTCATCA
GACTTTCTGATACCACACACAATGGTTAATATTTCAGTTGAATATACAAT
GCCATTCCATCACAAATAAAAATATTTTCGGCTCTGAGGCAGTGATGTAT
AATTTGCACACATTTCACAGGAAGTAACACAATCTCAGCTGCTGCTTCAG
AGCACTATAGGGATCATACTATATATGCATGTACACGTACTGATAATATC
AGGGGCAATTTCGATGATCTTCCAAATTCTTTACTGTCAGGGAGGGCCTA
GCAAGTTTACAGGGGGCTTCAGGCCAGCCCAAAAAGAAGAATTGAAATAA
CCCTTTTTTTTTTCGTTTTCGCCCGGGAACTCCCCGAATTTTATTTTGTG
GGTATAACCCATTTATCCCCTTAACGGGGGTCTCCTTCTATTACTTTTTA
TTTTTCTTCCCCCACTCTGTAGGCGCGATATGTTAAATTATTCTTTAACT
TCCAGCTCTCCTTTTATGTGTATGTATACGGGTTACCCTCCCTTCTTCCA
ACATATATCTTACACTTAAACATATTACGCCTCCCCTGACCACTATTTCT
CTATTTTGAAGACGATTACCTTTCTTTAGATCATATATTTTTTTTGTTAT
TTTCTTCCCGCCCTCCCTTTTTTTTTTTATACCCCCCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_g04.g1 MSMg01no454_g04.g1 CHROMAT_FILE:
MSMg01no454_g04.g1 PHD_FILE: MSMg01no454_g04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:33 2005
         (274 letters)



>mm_chr4_49242420_49243092
          Length = 673

 Score =  507 bits (262), Expect = e-148
 Identities = 271/274 (98%), Gaps = 1/274 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcttaggattataaaaccaaaaatttaatacattttttttcttaacaattgctttaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcttaggattataaaaccaaaaatttaatacattttttttcttaacaattgctttaaat 260

                                                                       
Query: 61  tggggtcatcagactttctgataccacacacaatggttaatatttcagttgaatatacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggggtcatcagactttctgataccacacacaatggttaatatttcagttgaatatacaa 320

                                                                       
Query: 121 tgccattccatcacaaataaaaatattttcggctctgaggcagtgatgtataatttgcac 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 tgccattccatcacaaataaaaatatttt-ggctctgaggcagtgatgtataatttgcac 379

                                                                       
Query: 181 acatttcacaggaagtaacacaatctcagctgctgcttcagagcactatagggatcatac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 acatttcacaggaagtaacacaatctcagctgctgcttcagagcactatagggatcatac 439

                                             
Query: 241 tatatatgcatgtacacgtactgataatatcagg 274
            ||| |||||||||||||||||||||||||||||
Sbjct: 440 aatagatgcatgtacacgtactgataatatcagg 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 673
Length adjustment: 9
Effective length of query: 265
Effective length of database: 664
Effective search space:   175960
Effective search space used:   175960
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)