BAC Information

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BAC

Clone NameMSMg01-454K11
Chromosome4 (Build37)
Map Location 84,287,157 - 84,287,366
singlet/doubletsinglet
Overlap genenone
Upstream gene4930473A06Rik, LOC668010, Bnc2
Downstream geneLOC100040660, LOC624465, LOC100040284, D530005L17Rik, LOC622811, LOC100040303, Sh3gl2, A930009N24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454K11.T7 (MSMg01no454_k11.b1)MSMg01-454K11.TJ (MSMg01no454_k11.g1)
ACCAG541380AG541381
length730746
length of high quality
(start - end)
214 (323 - 536)181 (328 - 508)
definitionCHROMAT_FILE: MSMg01no454_k11.b1 PHD_FILE: MSMg01no454_k11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:55 2005CHROMAT_FILE: MSMg01no454_k11.g1 PHD_FILE: MSMg01no454_k11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATTAGTCCTCATGTCGCTAAANGACTCACTATTGCAAGAGGATGCCGCG
GAATCTAGAGTCACAAACAAGTGGTGAAACAGAACACAGAGAACCCAGCA
TCTTCTGCCCAGTTTCAGGGACAGAAAGAATCCCTCATTAAGAACACAGC
TTTGGGCTGGGAAGTCCCAGACTTCAGCAATAACAGTGTCTTTGTGCCGA
GCGGTGGCAGCGCACGCCTTTAATCCTAGCATTCAGGAGGCAGAGGCAGG
CCGATTTCTGAGTTGGAGGCCAGCCTGGTCTACAAAGTGAGTACCAGGAC
AGCCAGGGCTACACATTTTTTCCCTGTCTCGAAAAAAACAAACAAACAGT
GTCTTTGCTTAACATGAATGAGCCCTTCCAACTCCAGCAGCATAGTAAGT
TAAAAAATAGCTTTAAATGCTAACTAGTTTACTAGGACTACAACATAAAT
TTACATAAAAAGCCATGAAGCCCTCCACCCTACTCATGGCCTTGACTATA
AAACAAGTGAGCTAGGATCTTTGGAACCCTTAAGACAAAGTATAGCAATA
CTAATTTCTAAGAAAAATATTTTCAATAATTCCTCAATTTTAAATACTTC
CCATATAGAATTCAAATGGAAGAAAACGCTGAACTAAACTTTGAGATTTT
GTTCCAATATCTTCTCCATACAAACCAGGAATCAGGCTTAAGGAATGGCC
GCTCTTTTTGCCCACTTGCACCCACTATGG
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTTCAGCGGNAATCTACATTGAGAGGAAGCTAGACTC
CCAGGCACTCTAACAAGTTCAGAATTATAGGTGAGGAGGCCACAATATCT
GCCCCCAAACTGGGATTAACTGGGAATAGCAGGACCCAGGGACTCAGGAA
CTCCCACCAGGCCAGCGGTTCCTTCTGGTCTGAGCTGGTGCCCTGGGCAG
AACTTGGGCACTAGCTCCACACCCAGTCTCACAAAACCCAGAAGAAGCTC
TACTGTCAGGGGCTCTATTATCTTTTGGATCATAGGTGTTCTATCACTCC
CAGGATCATAGGATCACAGGATCTCAGGAGCTTGGTCACACTAGGATTTC
AGGATCTCAGAGGCAGCTTGACTCCCAGGGCTCTGACACACCCAGAATCT
CAAGATCACAGGATCCCAGAAGCAGAGGGTCACATAGACAGCTGGACTCT
GAAGAGTTCTGACACAACCAGGACCACAGGAGGGACAGGCTCCAGTCAGA
GACAGCAAGAGCAGGGAGTACTTGAGATAACCAGATGGTGCGAGGCAAGC
ATAAGAACAGAAGCCTCAGAACACAAGTTTACGTGGGATCATCAGATTTT
TTTTCTTCCACCATAGCTAGTCCTGTATCCGTCCTCCTCTCGGATAAGCA
AGATTCAGATCCTAATTTTTTTTCCCCCGATGATAATATTATAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_k11.b1 MSMg01no454_k11.b1 CHROMAT_FILE:
MSMg01no454_k11.b1 PHD_FILE: MSMg01no454_k11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:55 2005
         (214 letters)



>mm_chr4_84286954_84287566
          Length = 613

 Score =  379 bits (196), Expect = e-110
 Identities = 208/214 (97%), Gaps = 4/214 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgtctcgaaaaaaacaaacaaacagtgtctttgcttaacatgaatgagcccttccaac 60
           |||||||||||||    |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 cctgtctcgaaaa----aaacaaacagtgtctttgcttaacatgaatgagcccttccaac 259

                                                                       
Query: 61  tccagcagcatagtaagttaaaaaatagctttaaatgctaactagtttactaggactaca 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 260 tccagcagcatagtaagttaaaaaatagctttaaatgctgactagtttactaggactaca 319

                                                                       
Query: 121 acataaatttacataaaaagccatgaagccctccaccctactcatggccttgactataaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 acataaatttacataaaaagccatgaagccctccaccctactcatggccttgactataaa 379

                                             
Query: 181 acaagtgagctaggatctttggaacccttaagac 214
           ||||||||||||| ||||||||||||||||||||
Sbjct: 380 acaagtgagctagaatctttggaacccttaagac 413


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 613
Length adjustment: 9
Effective length of query: 205
Effective length of database: 604
Effective search space:   123820
Effective search space used:   123820
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)