BAC Information

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BAC

Clone NameMSMg01-455A21
Chromosome4 (Build37)
Map Location 65,262,955 - 65,263,549
singlet/doubletsinglet
Overlap geneAstn2
Upstream genePappa
Downstream geneTrim32
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455A21.T7 (MSMg01no455_a21.b1)MSMg01-455A21.TJ (MSMg01no455_a21.g1)
ACCAG541685AG541686
length7291,752
length of high quality
(start - end)
595 (52 - 646)---
definitionCHROMAT_FILE: MSMg01no455_a21.b1 PHD_FILE: MSMg01no455_a21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:27 2005CHROMAT_FILE: MSMg01no455_a21.g1 PHD_FILE: MSMg01no455_a21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTATTTTTTCCCCTCTGGCAGTAGAAGTGAATTTAAGTCAGAAACCA
TTTGACAGCAGCTCTCTCAGAGTCTCCACCTACAGCATAGTGAGTCGAAG
ACCCTATGACCCTATCCTGAAGGCTTCCCTATTTTCTAGAAGAAGAAGCT
ACAGCAAGCCTGACGTGACAGAAAGCCAATACGAAGGGTATTCAGTATTC
ACATTGCTAAAATGTCAACATTGGGTGTTCATGCTAAGCTCACAAGGCTT
TCTCAGTTCCATTAAGTTAGCAAGCCATCTCTCTTCATCCATTCCCTCAA
ATAACCTGAAGGTGGTGAGGCTGCAGCTGTGTGTGGTGTTCTCCCCTGGT
GACGTTGCTCTGAACTGCTCAAGGAAGAGTAAAACAATCACCAGGAGATC
ATAACCATGTCTGTCACACATTCCTTTACTTAACGTTATAATCTCTCATC
TGTTTTGAATATTCTGAATAATAATTCTTAACAAATAGAAAGAAAGCTCC
TCTCATAAAATGTGGGTTGCTTGTGGAGGGTGGTTTTGACTCCAGCTCTG
TGCTTCCGGGAGGTAACTGTAACATGCGATTTGGTTTCTTTATCCACCTA
CAGCATTATTGAAAGGGTCAGATATGGTGTGTAAGTGTCTATGAAGTACT
AATAAATACCCAACCCTTTACTGACTTAC
TTCCTCTTTTATAAATATATNTCGGTGCGTGTGTGTGTGAGGGCGCGGAG
TCGGGGGTTCACGCGCATCAACTCAGACTGCAGACGTACACACTACAGAC
TTTTTTATATGTCTCCCCGCTCTGGCTGCGCGTCNCCTTGCGCGCTCCTC
ACCTTGCCACACCCGCACTACGCTGTGTGGTGTGACTCGCACGTGGTGAC
TGTGGTTACCATNATCCTTCTCTATGCTTCGTGCCCTCGATCTCTGCGCT
GCGATAGNTATATTTGTTGAATAACACAGAGCATACCTCCNCATAGATAT
CATCACGCTCAGTAGCAATAGATGCTATGCGAAGAGAAANGAGATGGATA
GTAGTGTGGCGTCCGCCCACTATTATCTATATCTCCGCGCGCCGCGTCAC
TTCGCCATCATCNAGTGCATTAGTTGGACGTGGCTGTGTTTACATACTCG
CACGCTCATTGCTACTTNCACTCGTCGGCTNTATCGCTGCGCACAGCGCG
TGGCACTCGTTAGCGCACAACACGCGTACTGTCAGGCGCGTTCTGTTACT
GTGGTCTCTGACGTATTTACACATAATCTATAATGATAACCGCAACTGAT
CGATAGCAGTTAGCCGAATAANATTATATTGCGCTGATGGACNCCGGTAT
GGTGNACAGGCGAGACCGTCAGTGAGAGAGGTGTGGTGTGCGTATACACT
CNCACCACTATGTCGTATCTACTATNGTGTATGCGAGATACTCGTGTGAC
TAGTACATATGCGGAAGACTAAGTAGGACGATGATAGAGTGAGAGAGTAT
CACACCTCAACTATCAGCGCTCACTACAGTAGTACTCCATCTCTCTCGTT
CTCGTCTGATGTATGGTCNTGCTGCTATCGTGCGTATCAGTAGCCACGTA
TTTGTCCGAGCGTCGATAANTATCCGACGNTATCGTGACTGGAGTCGTAC
GACTATATACACNTCTACAACAGCTATGACGTGTAGNCGAGTATATACTC
GTGAGCGCACGCGATCTTATAGACACGGCTCACGTCAACGACCCGACACA
CGTAGATCANTCGCATGCACTGCAGTCGCTGCTCGTTGTGATGCGTGATA
TTAGCGATGATATGTACGCGCGCGACGCATGTCTATATGATATAGTCGTT
GTATCCGCCTCTCGTCAGTATCTGTGCTGCGCACCATGAAGTCGACTGTG
ACACCGCGTAGACTATATGTACTTGTGTANTATACTCAGGGAGATAGCGN
CACGTGACAGTGATGACTACTGCTAGACGTTGTTGTCGCGCGCGTAGAAG
ACAGAGANAGCGTGCGCATCGACATACACTAGGCGCGCTGTGTGTGGTAG
TGTAGAGNCCGCACGCGCGTGATGGTCNCGCTATATGTAACTGTATTACC
GAGGACGCGAGCGAGATATATTATATAGAGAGAGAGCGTAGCGCGCGCGA
CATGTCGCNTGTCTCTGCGNTAGNCGCACAGNNTCAGTCTATCTATANGC
ATGAGCATATGTGCTCTACGATGTGCCTAGTAAGATATAGTNGCNGCGAT
GATNATCGTGTGTCGTGTGTCGNTGTAGCGACGAGCCATGTCAGATCACC
GATATCTATACTATCCCAGCAGTGCGCATATATGACATGTCTCNATTACT
ACGACTATGAACGACGATACTATGTCTGCGATGTGTGCGATAATNCTACC
CGATGTATTGATCCGGCCGGCATGTCTCCAGTGGCGATGCAATGTTCAGT
GN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_a21.b1 MSMg01no455_a21.b1 CHROMAT_FILE:
MSMg01no455_a21.b1 PHD_FILE: MSMg01no455_a21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:27 2005
         (595 letters)



>mm_chr4_65262755_65263749
          Length = 995

 Score = 1127 bits (583), Expect = 0.0
 Identities = 592/595 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctattttttcccctctggcagtagaagtgaatttaagtcagaaaccatttgacagcag 60
           |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctatttcttaccctctggcagtagaagtgaatttaagtcagaaaccatttgacagcag 260

                                                                       
Query: 61  ctctctcagagtctccacctacagcatagtgagtcgaagaccctatgaccctatcctgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctctcagagtctccacctacagcatagtgagtcgaagaccctatgaccctatcctgaa 320

                                                                       
Query: 121 ggcttccctattttctagaagaagaagctacagcaagcctgacgtgacagaaagccaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcttccctattttctagaagaagaagctacagcaagcctgacgtgacagaaagccaata 380

                                                                       
Query: 181 cgaagggtattcagtattcacattgctaaaatgtcaacattgggtgttcatgctaagctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgaagggtattcagtattcacattgctaaaatgtcaacattgggtgttcatgctaagctc 440

                                                                       
Query: 241 acaaggctttctcagttccattaagttagcaagccatctctcttcatccattccctcaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaaggctttctcagttccattaagttagcaagccatctctcttcatccattccctcaaa 500

                                                                       
Query: 301 taacctgaaggtggtgaggctgcagctgtgtgtggtgttctcccctggtgacgttgctct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taacctgaaggtggtgaggctgcagctgtgtgtggtgttctcccctggtgacgttgctct 560

                                                                       
Query: 361 gaactgctcaaggaagagtaaaacaatcaccaggagatcataaccatgtctgtcacacat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaactgctcaaggaagagtaaaacaatcaccaggagatcataaccatgtctgtcacacat 620

                                                                       
Query: 421 tcctttacttaacgttataatctctcatctgttttgaatattctgaataataattcttaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcctttacttaacgttataatctctcatctgttttgaatattctgaataataattcttaa 680

                                                                       
Query: 481 caaatagaaagaaagctcctctcataaaatgtgggttgcttgtggagggtggttttgact 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caaatagaaagaaagctcctctcataaaatgtgggttgcttgtggagggtggttttgact 740

                                                                  
Query: 541 ccagctctgtgcttccgggaggtaactgtaacatgcgatttggtttctttatcca 595
           | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctagctctgtgcttccgggaggtaactgtaacatgcgatttggtttctttatcca 795


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)