BAC Information

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BAC

Clone NameMSMg01-455M09
Chromosome4 (Build37)
Map Location 54,217,286 - 54,369,000
singlet/doubletdoublet
Overlap genenone
Upstream gene4930522O17Rik, AI427809, LOC100041197, Slc44a1, Fsd1l, LOC666483, Fcmd, Tal2, LOC435784, Tmem38b, LOC670124, LOC100041280
Downstream geneLOC666901, LOC100041303, LOC384018, EG666920, Zfp462, LOC670211, Rad23b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455M09.T7 (MSMg01no455_m09.b1)MSMg01-455M09.TJ (MSMg01no455_m09.g1)
ACCAG542234AG542235
length726728
length of high quality
(start - end)		190 (122 - 311)530 (79 - 608)
definitionCHROMAT_FILE: MSMg01no455_m09.b1 PHD_FILE: MSMg01no455_m09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:22 2005CHROMAT_FILE: MSMg01no455_m09.g1 PHD_FILE: MSMg01no455_m09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,368,811 - 54,369,000)(54,217,286 - 54,217,815)
sequence
ACTCAXXXXXXXXXXXXXXXXXXXXXXXNCACTTCGGTAGCGGATCCGCG
GAATTCCAGTTACTTACAACATTTACCAGACTTGAAAATGATTCAAGGCA
AAGTCACAACAATAGAGTCTTAAATCATGGACACTTCCAAGGTCTCAGTG
AATCAGCACATTCAGAAATCTAATCATATCATGTCTCCCAGAAAAAAAAA
ATACAAAATAGGAAACACTTGGTTGTGCTTTAATAATGTACTTAATTGTT
AGAATTTGCACGGCACAGAGGACTGCCTGAGAAGTGGAATCAGTTTCTTA
TGGCTGCACAGTTTCTGGTATCTCGNTTATGTCATAGAACTAGAGTACAG
CCAAGTGTGACATTCCACTCCTTAATGGATCCAAGGGTTCGGCCTTCTGG
CAAGGAACTGAGGAGTGCGCTCCTCAGCACCAGCTCACTGCAGTTGATAT
TTCCCCCTCGGGTAGGTTGTTTATTTGTTAGCGTCTGTGTATTTGTTTAA
CAAAGACACATGATTCACCATGTGAGAATTAATAAGTTCTCATCAAAGAG
TGTGAAACCTCAATGCTAATTGAAATATAAAAGCATGGCGCCTGGTGGTT
GGCTAGACTCGCATACCAAACTGTCCTGGCCAACAATTTAATCTTATTTA
ACCCAGCGGTTTCTATGGTCTGTCGTCCCTTGTTTAAAAATTCCTCCTAT
GTTCTCTGGACTAGTTATGTTCCCAC

CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGGAAAGGAAATGGATAAAA
GATAGGGAAATCTAAAGATTGTTTTGACTAGGGAGGCAATTAAGCATGGC
GACTTCAGAATTTCTGTGCAGAAGAACTCTTGAGGCAGCATTCTTGTAAA
AAAGGAGCCAGAGAACTTTCATTGAAGCTGACGTCACATGACAGCTTGAT
GTAAGTCTGATAAGCTACCCATTGCCCTTATTAAAAACAAGAATGCATAG
TTCCTGGATGTAACTGTTTAGGGTGAATTAATCTCATCCGAGCCATCTCC
ATGACAACACCACCACGATAGACTAGAAAATAGATGAGATGAGCTGTGGA
AGAGACAGAGCAGAAGCAGGTAAAATCAGGGAGTAGGAGGCTTGTAAAAC
GTTAGGGGTGCTTTACAAGCTCTCAAGTATCAGACTGGAGGCCTTGGGAG
GAGGACTATGGGAAGAGGATGGAGGGCACTGGGAAATGGCAAGAATTGGA
GAGGCAAATGAGCAGCAGTAGGTGGATTCAAAGAATGTGAATTAAGTTTA
ATTCTTCAGTACAACATTTTTCTTGATCTGTGAGAAAACCATTTCTGATA
TAAATCTAGTAAGTTATAATAATATGGAACATACCCTGGGCTAATTCTGT
ATGTCAAAAATTATTTTGGGCCCTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_m09.b1 MSMg01no455_m09.b1 CHROMAT_FILE:
MSMg01no455_m09.b1 PHD_FILE: MSMg01no455_m09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:22 2005
         (190 letters)



>mm_chr4_54368611_54369200
          Length = 590

 Score =  352 bits (182), Expect = e-102
 Identities = 188/190 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatcatggacacttccaaggtctcagtgaatcagcacattcagaaatctaatcatatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 aaatcatggacacttccaaggtctcagtgaatcagcacattcagaaatctaatcatatca 331

                                                                       
Query: 61  tgtctcccagaaaaaaaaaatacaaaataggaaacacttggttgtgctttaataatgtac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tgtctcccagaaaaaaaaaatacaaaataggaaacacttggttgtgctttaataatgtac 271

                                                                       
Query: 121 ttaattgttagaatttgcacggcacagaggactgcctgagaagtggaatcagtttcttat 180
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ttaattgaaagaatttgcacggcacagaggactgcctgagaagtggaatcagtttcttat 211

                     
Query: 181 ggctgcacag 190
           ||||||||||
Sbjct: 210 ggctgcacag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space:   105924
Effective search space used:   105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no455_m09.g1 MSMg01no455_m09.g1 CHROMAT_FILE:
MSMg01no455_m09.g1 PHD_FILE: MSMg01no455_m09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:22 2005
         (530 letters)



>mm_chr4_54217086_54218015
          Length = 930

 Score = 1002 bits (518), Expect = 0.0
 Identities = 527/530 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaggaaaggaaatggataaaagatagggaaatctaaagattgttttgactagggaggca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaggaaaggaaatggataaaagatagggaaatctaaagattgttttgactagggaggca 260

                                                                       
Query: 61  attaagcatggcgacttcagaatttctgtgcagaagaactcttgaggcagcattcttgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attaagcatggcgacttcagaatttctgtgcagaagaactcttgaggcagcattcttgta 320

                                                                       
Query: 121 aaaaaggagccagagaactttcattgaagctgacgtcacatgacagcttgatgtaagtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaaggagccagagaactttcattgaagctgacgtcacatgacagcttgatgtaagtct 380

                                                                       
Query: 181 gataagctacccattgcccttattaaaaacaagaatgcatagttcctggatgtaactgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 381 gataagctacccattgcccttattaaaaacaagaatgcatagttcctggatgtaactgga 440

                                                                       
Query: 241 tagggtgaattaatctcatccgagccatctccatgacaacaccaccacgatagactagaa 300
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagggtgaattaatctcatccgagccatctccatgacaacaccaccacgatagactagaa 500

                                                                       
Query: 301 aatagatgagatgagctgtggaagagacagagcagaagcaggtaaaatcagggagtagga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatagatgagatgagctgtggaagagacagagcagaagcaggtaaaatcagggagtagga 560

                                                                       
Query: 361 ggcttgtaaaacgttaggggtgctttacaagctctcaagtatcagactggaggccttggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggcttgtaaaacgttaggggtgctttacaagctctcaagtatcagactggaggccttggg 620

                                                                       
Query: 421 aggaggactatgggaagaggatggagggcactgggaaatggcaagaattggagaggcaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggaggactatgggaagaggatggagggcactgggaaatggcaagaattggagaggcaaa 680

                                                             
Query: 481 tgagcagcagtaggtggattcaaagaatgtgaattaagtttaattcttca 530
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgagcagcagtaggtggattcaaagaatgtgaattaagtttaattcttca 730


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space:   478400
Effective search space used:   478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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