Query= MSMg01no456_b21.b1 MSMg01no456_b21.b1 CHROMAT_FILE:
MSMg01no456_b21.b1 PHD_FILE: MSMg01no456_b21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:49 2005
(417 letters)
>mm_chr4_135803070_135803892
Length = 823
Score = 725 bits (375), Expect = 0.0
Identities = 409/423 (96%), Gaps = 6/423 (1%)
Strand = Plus / Plus
Query: 1 gagctgagagtgggaggcagagttattccctccaccccaaattactcttccaagccgacc 60
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 gagccgagagtgggaggcagagttattccctccaccccaaattactcttccaagcccacc 260
Query: 61 ccctgtgtaccggaatcacccaaaactt-g-----cggagcgtggtcccgataccccttt 114
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 261 ccctgtgtaccggaatcacccaaaacttagtctttcggagcgtggtcccgataccccttt 320
Query: 115 gagaggttgttagaaaaaataaagactggccggcaaagggctctgagtatacctcgcgag 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagaggttgttagaaaaaataaagactggccggcaaagggctctgagtatacctcgcgag 380
Query: 175 tacgtgtacagcacaggccttgggcgcaccaaggagcctacctaagttagggcagagctg 234
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacgtgtacggcacaggccttgggcgcaccaaggagcctacctaagttagggcagagctg 440
Query: 235 acgtcatattctgttccaagatgcgatgaattcaccaactttcccagcttgggcatagct 294
|||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acgtcaaaatctgcaccaagatgcgatgaattcaccaactttcccagcttgggcatagct 500
Query: 295 ccctctgggagctcagtgatgctgagacccggcagctctgtacttcccactgctatgctg 354
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccctctgggagcgcagtgatgctgagacccggcagctctgtacttcccactgctatgctg 560
Query: 355 acactcatcacccccgaaccctcatgctcgaatctccctggagcctggggcacccctagg 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acactcatcacccccgaaccctcatgctcgaatctccctggagcctggggcacccctagg 620
Query: 415 aga 417
|||
Sbjct: 621 aga 623
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 823
Length adjustment: 9
Effective length of query: 408
Effective length of database: 814
Effective search space: 332112
Effective search space used: 332112
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no456_b21.g1 MSMg01no456_b21.g1 CHROMAT_FILE:
MSMg01no456_b21.g1 PHD_FILE: MSMg01no456_b21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:49 2005
(411 letters)
>mm_chr4_135971845_135972655
Length = 811
Score = 717 bits (371), Expect = 0.0
Identities = 405/425 (95%), Gaps = 14/425 (3%)
Strand = Plus / Minus
Query: 1 cttagtaaaaccaggccccaggactcagctcagggtcatcttcacacggggagcggtttg 60
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 673 cttagtaaaaccaggccccaggactcagctcagggtcatcttcacagggggagctgtttg 614
Query: 61 aggccagcatgacatgagacccagattt--------------aaaaaaaaaaaaaaaaaa 106
|||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 613 aggccagcatgacatgagacccagatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa 554
Query: 107 ggaaaaaggaaaagaaaacaaccttcaccaaaccagtgattaagtaataaacaaataaat 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ggaaaaaggaaaagaaaacaaccttcaccaaaccagtgattaagtaataaacaaataaat 494
Query: 167 gaacaactatggaagggcttcgtcaatgtcagccccacttacgcaaagggttcgctggaa 226
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gaacaactatgaaagggcttcgtcaatgtcagccccacttacgcaaagggttcgctggaa 434
Query: 227 ccctggcactgcagcggggagagttttctacactgaatctcctctaagcaatccaggagc 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ccctggcactgcagcggggagagttttctacactgaatctcctctaagcaatccaggagc 374
Query: 287 tccgttctttactgctcccattttaaaggtgaagaaacaactcaagctctcacagctaaa 346
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 373 tccgttctttactgctcccattttaaaggtgaaaaaacaactcaagctctcacagctaag 314
Query: 347 aaatgatggagctgggtgggggagatgactcagcggggaagagcactgactgctcttccg 406
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 aaatgatggagctgggtggaggagatgactcagcggggaagagcactgactgctcttccg 254
Query: 407 aaggt 411
|||||
Sbjct: 253 aaggt 249
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space: 322404
Effective search space used: 322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
