Query= MSMg01no456_d20.b1 MSMg01no456_d20.b1 CHROMAT_FILE:
MSMg01no456_d20.b1 PHD_FILE: MSMg01no456_d20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:59 2005
(547 letters)
>mm_chr4_56890946_56891892
Length = 947
Score = 957 bits (495), Expect = 0.0
Identities = 538/559 (96%), Gaps = 12/559 (2%)
Strand = Plus / Minus
Query: 1 gggctgcacagagaaaccctgtctcaaaaaaccaaaataaataaataaata--------- 51
||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 796 gggctacacagagaaaccctgtctcagaaaaccaaaataaataaataaataaataaataa 737
Query: 52 --aaa-cccacacatactgcagtgccatctgacttgctatgtatagtatagctcatgctg 108
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 736 ataaaccccacacatactgcagtgccatctgacttgctatgtatagtatggctcatgctg 677
Query: 109 gtttcctggtggtatcatgaatccttcaacattatgacctgttaatccatcacctgttag 168
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 676 gtttcctggttgtatcatgaatccttcaacattatgacctgttaatccatcatctgttag 617
Query: 169 atctgaccactaaaccacttactctgttctttaataagttggtcatttgctcattaatac 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 atctgaccactaaaccacttactctgttctttaataagttggtcatttgctcattaatac 557
Query: 229 ttttcttgagcattattttattctaggcaccatgccaaggaccacagggggctgtgggcg 288
||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 556 ttttcttgagcattagtaaattctaggcaccatgccaaggaccacaggtggctgtgggcg 497
Query: 289 atgactcccacgatggcttctctcaccttaaatgccagccagatcatgtaaatcatacta 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 atgactcccacgatggcttctctcaccttaaatgccagccagatcatgtaaatcatacta 437
Query: 349 aatctaaaattcttgcattaaaatggttgaggagagaaaccaagtttttgtttttaaact 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aatctaaaattcttgcattaaaatggttgaggagagaaaccaagtttttgtttttaaact 377
Query: 409 atattgtgataagtttataattagcacatgctcataagcagcaaatatacacagtgagtt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 atattgtgataagtttataattagcacatgctcataagcagcaaatatacacagtgagtt 317
Query: 469 tgtatacatctacaaattatgttgctccagtgtgcttttagccatgtaaaagcaaatttg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tgtatacatctacaaattatgttgctccagtgtgcttttagccatgtaaaagcaaatttg 257
Query: 529 caaaaaactaagtttgagc 547
|||||||||||||||||||
Sbjct: 256 caaaaaactaagtttgagc 238
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space: 503169
Effective search space used: 503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no456_d20.g1 MSMg01no456_d20.g1 CHROMAT_FILE:
MSMg01no456_d20.g1 PHD_FILE: MSMg01no456_d20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:00 2005
(244 letters)
>mm_chr4_56706636_56707279
Length = 644
Score = 460 bits (238), Expect = e-134
Identities = 241/242 (99%)
Strand = Plus / Plus
Query: 1 caagccatctgaccttgtgtcataacaagcatcgcttaaaagactgcctcagcctatgca 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 caagccatctgaccttgtgtcataacaagcatcgcttagaagactgcctcagcctatgca 260
Query: 61 ccatgcagggaatgcataagcaactgctcataagcaggagagttcaacctgtgtgaattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccatgcagggaatgcataagcaactgctcataagcaggagagttcaacctgtgtgaattt 320
Query: 121 gtgttcttatcacctcaaccccaacacttgccaaaaattaaagtcatataaacagagaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgttcttatcacctcaaccccaacacttgccaaaaattaaagtcatataaacagagaaa 380
Query: 181 aaatcattcaggagaggaggaggaggaagagaaagagagagagagagagagagagagaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatcattcaggagaggaggaggaggaagagaaagagagagagagagagagagagagaga 440
Query: 241 ga 242
||
Sbjct: 441 ga 442
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
