TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACGTTCCAGTTGTTCATGGGAGGTCTCAATGCGGTTCAATTTTT
CTGAGTTTTTTTCTGCAATTTCTTGAAATTTCTACAAAAGAAGTCAAATA
ATATGTATAATCATGAAACAGAAAGACATATACTTTTGATGAAACTACAG
CTTCCCTTCAAAAGATCTGTTATGAAATATCTAAGTGCACACAGTGGGCC
TGACAGGTTTGAATGTGCACACTGACCTTGAAAATCTCTTGCATGGCAGC
TTTACATAAACTATAACACATAAACCTGAGAGCATTTCATCAATCTCCTG
TGTCCTGGCACATGAGTACACATGTGTAGGAGAAGTGGGGGCTGGAGAGA
TGGCTCAGTGGTTAAGAGCACCGACTGCTCTTCCAGAGGACCCAGGATCA
ATTCCTAGCATCCACACGGCAGCTCACAACTGTCTGGAACGCCGGATCTG
ACACCCACACACAGGCTTACACGCAGGCGAAACACCAAGGTCCATGAAAT
AAAAATCAGTAATTTTTTTTAAAGAGAGAGAAAAATGAGCTTTCTGGGAC
TAATTTCTCCTTCCCACTCCTCAATAATTATTATTTCCCCGTCCACAGAA
ACGACACTCAAAAATGTGGGCTTTTTATAGTAAAAGAAGTACCCGTTGCC
CACATTAGACTGAATAAAATTTAGTGATGCTAAGAAACGTTTATTGGA

NNCCCGATGATATGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGGGGACTCTTGAGAGAGATAAATT
TGAGAGCCCTAAGAGGGTCTGTAGCAGCTGCTGCCCTCCTTGCTGCTGGT
GGCTTCTCTGGTGTTGCTGTTGCTGCTGCTGCTGTTATTTTTGCTATGGC
TGGATTTCTGGATTTCTGGATTACTGGATTGCTGGATTGTTTTGGTGGTT
AGCTGGCTGAAGATATTCTGATGATGAAAATTGGACTTGCCCCAGAGAAC
TTGATGCTCCTAGCCTGTTTTTTTATAGCCTAAAGCGGTCTATACCTCCT
TTCCCCTCTAGTTCTTTCCTTCCTACCTAGTATTGGGGTTTGGAAGGGAC
TAGCGTAGAAAAAAGGTTGCAAGGGTGGTAGACATCAGAACCCAATAAAG
TAGCCCAGATAGTATGTATACAGTTCACATACTGCCAGCATACAATGCCA
CAGGTTATACATTATCATTTCCAATGTCAATATATGTACTACATTGAGGC
AATATTGTACCTTAGTTCGCCCTGACGCCCCTTTTTCTTAAACCTCTGTC
TTTCGGTACCTCCCTTGCTTCGTGTTCACATGCCCCCTTCCTACATCTCT
CTCTCTTTTCTCCTTTTTTCTTTCCTCCTCCTTATCCTTCTTCCCCCCTT
TCTTGCTCCTTTATTTAACTCCCAAGTCTGTTTTCCTTCCCTTTTTTTTT
ACCCCCCTTCAATTCTGCTCTTCTTTTC

Query= MSMg01no456_h24.b1 MSMg01no456_h24.b1 CHROMAT_FILE:
MSMg01no456_h24.b1 PHD_FILE: MSMg01no456_h24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:20 2005
         (551 letters)



>mm_chr4_83326449_83327399
          Length = 951

 Score =  988 bits (511), Expect = 0.0
 Identities = 535/543 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcacgttccagttgttcatgggaggtctcaatgcggttcaatttttctgagttt 64
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 gaattctcacgaaccagttgttcatgggaggtctcaatgcggttcaatttttctgagttt 484

                                                                       
Query: 65  ttttctgcaatttcttgaaatttctacaaaagaagtcaaataatatgtataatcatgaaa 124
           |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 483 ttttctgcaatttcttgaaatttctagaaaagaagtcaaataatatatataatcatgaaa 424

                                                                       
Query: 125 cagaaagacatatacttttgatgaaactacagcttcccttcaaaagatctgttatgaaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 cagaaagacatatacttttgatgaaactacagcttcccttcaaaagatctgttatgaaat 364

                                                                       
Query: 185 atctaagtgcacacagtgggcctgacaggtttgaatgtgcacactgaccttgaaaatctc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 atctaagtgcacacagtgggcctgacaggtttgaatgtgcacactgaccttgaaaatctc 304

                                                                       
Query: 245 ttgcatggcagctttacataaactataacacataaacctgagagcatttcatcaatctcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ttgcatggcagctttacataaactataacacataaacctgagagcatttcatcaatctcc 244

                                                                       
Query: 305 tgtgtcctggcacatgagtacacatgtgtaggagaagtgggggctggagagatggctcag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tgtgtcctggcacatgagtacacatgtgtaggagaagtgggggctggagagatggctcag 184

                                                                       
Query: 365 tggttaagagcaccgactgctcttccagaggacccaggatcaattcctagcatccacacg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 tggttaagagcaccgactgctcttccagaggacccaggatcaattcctagcatccacacg 124

                                                                       
Query: 425 gcagctcacaactgtctggaacgccggatctgacacccacacacaggcttacacgcaggc 484
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 123 gcagctcacaactgtctggaacgccggatctgacacacacacacaggcttacacgcaggc 64

                                                                       
Query: 485 gaaacaccaaggtccatgaaataaaaatcagtaattttttttaaagagagagaaaaatga 544
            ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 63  aaaacaccaaggcccatgaaataaaaatcagtaatttttttaaaagagagagaaaaatga 4

              
Query: 545 gct 547
           |||
Sbjct: 3   gct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space:   509081
Effective search space used:   509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)