TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGAATCCGCGG
AATTCAGGCATCCCATAAAACAGTCAATGCCTCCAATCTCTTTACTGAGC
TCTGTGGTGATGAAGTAACAACTTGGTAAAATAACAAAAGCATATGTTCA
GGAGTCTGGTATCACACAGGTCAGAAAATATGCTAAAGCAACTGTCTTCA
ATGGCAGTGTATGGCAGTGTAACCCATGTTGGAGCATCACAATGTAGTAT
GGTTATGTTACTGCCCCAGGCCAACTCTTCCTCAAACCTGGATTTCCATA
TTGTCAGAAAGAGCTATCTAGTATTCCTCACTAAATCAAATCCCCTTACT
CCACTAGAAATTCTCCTGTTGTTAGACGCAAACACACACACACACACACA
CACACACACACACACACACACACATGCTCATGAACACACACACACATATA
TGCACTCACATGCATGCACACAGATGCACACAATCTGTGGAGATATAAAC
TAGAGAAATGATCTATGAATAAATGACTTTGAGGACTATTTATATACAGA
TTAAATTTAAAGCCTTATAGTCCTCAAAATATGCCATCCATAGAGAGAGA
ACATCCCCTCCAATAACACTTGAATAATTTTTGGAAGAAAATTGCCCCAG
CAATGAAAACTTGATACACTATCCCTTTACCCGTTATCTCACCATATATT
TCTAAAAATATATATTATAAAGTTTCTTGAAAAACACTTATAAGAATTCC
CTGATATTCTTTATG

AAAACTCGATGACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGCAGGCAAGCTCTCCT
CTTTCAGGGAAGGTGCACAGTTATCTGGTCTTTGGACCTCCTCCTGGCTG
AAGATGAAGGCCCAAAACAGGATCTTTCCCAGAAGCTGTGTTGCTTTGGC
CAGGTGGCTGGCTGTCTGGAGCCGAAGATGGTGCCGCTTCAGAAGCTCTG
TGGCTCTCGCCTGTCCCAGAAATTGCTGGCCTCTGTATTCCACACCCTCA
CCTGTGCAGCCTGACCTCCACGGAGTCCCGGAGCCAAGGAGGCTCCTGCC
GGAGCCTGAGGCAGAAAACTCTCGAGCCCGGCAGACCCCTGTGCTCTCAC
CAGAAAAGTGGCCGGTTGTCTGGACCCAAAGATGGCACGCCTCAAAACTG
GTTTAAGAATTCCAAAATCCTTTATGGCCTTTGGGGGCCGGAAAATAAAG
GGGGGGGAGGAAATTTTTTTTCTGGCCCCGTTATATTGGGAGTCCCATGT
TCTTTGGGATGTCCGGGGGCACCCTTTCTTTTATATTTGGGAGGTTTCCC
CTAACCATTTTGAAAAATGGGCCCAGAAACGCTCCCCCCTTATTAGTGGC
TTCTCGGGGCNCAAAAGAAAAANATTTTTTTTTGGTGTTTGTCGCCTCTT
TTGTTGAATGTCTTTTTTAATATATGTCGTTTTGATTTCCCACTTGTCCT
TCAATACAATCATTTTTTCATACCATTATCTTTCTTCCTCTTTATCTCCT
CTCTTTTTCA

Query= MSMg01no456_j24.b1 MSMg01no456_j24.b1 CHROMAT_FILE:
MSMg01no456_j24.b1 PHD_FILE: MSMg01no456_j24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:30 2005
         (434 letters)



>mm_chr4_39609587_39610420
          Length = 834

 Score =  739 bits (382), Expect = 0.0
 Identities = 429/460 (93%), Gaps = 26/460 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtcaatgcctccaatctctttactgagctctgtggtgatgaagtaacaacttggtaaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtcaatgcctccaatctctttactgagctctgtggtgatgaagtaacaacttggtaaaat 260

                                                                       
Query: 61  aacaaaagcatatgttcaggagtctggtatcacacaggtcagaaaatatgctaaagcaac 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacaaaagcatatgttcagaagtctggtatcacacaggtcagaaaatatgctaaagcaac 320

                                                                       
Query: 121 tgtcttcaatggcagtgtatggcagtgtaacccatgttggagcatcacaatgtagtatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 tgtcttcaatggcagtgtatggcagtgtaacccatgttggagcatcacagtgtagtatgg 380

                                                                       
Query: 181 ttatgttactgccccaggccaactcttcctcaaacctggatttccatattgtcagaaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttatgttactgccccaggccaactcttcctcaaacctggatttccatattgtcagaaaga 440

                                                                       
Query: 241 gctatctagtattcctcactaaatcaaatccccttactccactagaaattctcctgttgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 gctatctagtattcctcactaaatcaaatccccttactccactagaaattctcatgttgt 500

                                                                       
Query: 301 tagacgcaaacacacacacacacacacacacacacacacaca--cacac----------a 348
           ||||||||||||||||||||||||||||||||||||||||||  |||||          |
Sbjct: 501 tagacgcaaacacacacacacacacacacacacacacacacatacacacgcacgcacgca 560

                                                                       
Query: 349 cac--------------atgctcatgaacacacacacacatatatgcactcacatgcatg 394
           |||              ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 561 cacgcacgcacacgcacatgctcatgaatacacacacacatatatgcactcacatgcatg 620

                                                   
Query: 395 cacacagatgcacacaatctgtggagatataaactagaga 434
           ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 621 cacacagatgcacacaatctgtgtagatataaactagaga 660


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space:   350625
Effective search space used:   350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)