BAC Information

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BAC

Clone NameMSMg01-456L05
Chromosome4 (Build37)
Map Location 98,694,026 - 98,694,528
singlet/doubletsinglet
Overlap geneDock7
Upstream geneNfia, LOC100039459, LOC669426, LOC384106, 0610025J13Rik, Tm2d1, Inadl, L1td1, Ankrd38, LOC100039541, Usp1
Downstream geneAngptl3, LOC665193, Atg4c, LOC665212, LOC638890, LOC100042589, Foxd3, Alg6, Itgb3bp, BC020077, Pgm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456L05.T7 (MSMg01no456_l05.b1)MSMg01-456L05.TJ (MSMg01no456_l05.g1)
ACCAG542941AG542942
length723794
length of high quality
(start - end)
503 (74 - 576)124 (127 - 250)
definitionCHROMAT_FILE: MSMg01no456_l05.b1 PHD_FILE: MSMg01no456_l05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:36 2005CHROMAT_FILE: MSMg01no456_l05.g1 PHD_FILE: MSMg01no456_l05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXN
CGCGGAATTCAATTTTTTCATGCAGAGAAGCATACGATGAGAAATGACTC
TACAAAACTATCCTGTAACCTCCACGGGTGTACTCCCTATACTCGCTAAT
AATGATAACATGATCAAAACATAGGTAATATTTACTGATCATGGGGAACA
TGTACTTAAAGGGACAGAAATACCTGTAAAGACTAAAATAATGCAGTGCT
CGGAATGGAAGCAAAGCATCGCACATGCTAGGCAAGCACTGTGCTGCATG
ACCTCTGAGCCCAGCTGATGCTGTTCTGGTCAGAGAAAGGGTGGCACTAA
TGTAGTATTCTAGTGCTTTTCTTTTCCTCAATTCACAACATTTCTATTTA
CATACATTTTCTCAGATATTTCCAAGCATTCCTAACAAACATATTACATT
AGTCTTCCACTTATCTACAAGGTAACCAGGGTCCATGGAATCCAATACCT
TGTTCTGGCCACTGCAGACATGTGGGGCACACACAAGGAAGCAAAACACT
CATAGACATAAAATAAAAAAGCATTCTTTAAAGAGTCAAAATACCTCATT
TTTAATTTGGAAGTCATGCTACCATAATATTACACACTCTTGGGAAAGCA
GGCAGCATCCGCGGCTCGCTTGGAACCAATTACCTGAGAGCTGTTGAATG
TCCTCAACTCCTGGAGATCTAGG
CCGATGCTGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTAAATCATGGAGGGAAGTCAAGGCA
GCAGCTAAAGGCAGGTGGTAACTACCCCAGGAGGTGGGAACTAAACCAGG
AGGTGGGAACTAAACCAGGAGGTGGGAACTAAAGCAGAAACCATGACGAA
ACATCGACTGCTGGCTTGCTTCTCTACACCACACACAAATACCTGCCCTA
CAGTAGCACTGCCCAGTGGGACGGGCCCTCCCACATCAACTATCAATCAA
GGAAACTTCCTGCCCATACCCTTTTTTCAGTCTATTGAAGGCAACTCCTC
AACTGAGGTTCCCTCTTCCCAGGCCACACGAAAGCTAATCAGGACACCCA
GAACCTAATTGTTATGAGGTGATAATACTTATCTATTCTGTGAGGTACTC
CTGGCTAACATAATTGTTTTGTACTCACATCACACATCTATTGACTTCAA
AGATGTTCACTGATTACAACGAGTTATCCTTTATTACAGTTTATTTAATA
CGCTCTCCTGCCCTTCTCTTTTACAACCATTTTTGCCCCATATCTTTCCC
TCTTTTTTTTTTTTTTTTTCCGCCCCTTTCTCTTCTTCCCTTTTTTTTCT
TTCTTTCTTCCTTTTTTTTCTCTTTCTTTTTTTTTCCCTTTCTTCTATCT
TTTTTCTTCGCCTCTTCCTCTCTATTTCACTATCTTCTTTATGTTCTCCT
TTCTCTTATTTTTTTCCCCTCCCTCTCCCGTATTTTCTATTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_l05.b1 MSMg01no456_l05.b1 CHROMAT_FILE:
MSMg01no456_l05.b1 PHD_FILE: MSMg01no456_l05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:36 2005
         (503 letters)



>mm_chr4_98693826_98694728
          Length = 903

 Score =  949 bits (491), Expect = 0.0
 Identities = 500/503 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagaagcatacgatgagaaatgactctacaaaactatcctgtaacctccacgggtgtac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagaagcatacgatgagaaatgactctacaaaactatcctgtaacctccacgggtgtac 260

                                                                       
Query: 61  tccctatactcgctaataatgataacatgatcaaaacataggtaatatttactgatcatg 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 tccctatactcgctaataatgataacaagatcaaaacataggtaatatttactgatcatg 320

                                                                       
Query: 121 gggaacatgtacttaaagggacagaaatacctgtaaagactaaaataatgcagtgctcgg 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggaacatgtgcttaaagggacagaaatacctgtaaagactaaaataatgcagtgctcgg 380

                                                                       
Query: 181 aatggaagcaaagcatcgcacatgctaggcaagcactgtgctgcatgacctctgagccca 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatggaagcagagcatcgcacatgctaggcaagcactgtgctgcatgacctctgagccca 440

                                                                       
Query: 241 gctgatgctgttctggtcagagaaagggtggcactaatgtagtattctagtgcttttctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctgatgctgttctggtcagagaaagggtggcactaatgtagtattctagtgcttttctt 500

                                                                       
Query: 301 ttcctcaattcacaacatttctatttacatacattttctcagatatttccaagcattcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcctcaattcacaacatttctatttacatacattttctcagatatttccaagcattcct 560

                                                                       
Query: 361 aacaaacatattacattagtcttccacttatctacaaggtaaccagggtccatggaatcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacaaacatattacattagtcttccacttatctacaaggtaaccagggtccatggaatcc 620

                                                                       
Query: 421 aataccttgttctggccactgcagacatgtggggcacacacaaggaagcaaaacactcat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aataccttgttctggccactgcagacatgtggggcacacacaaggaagcaaaacactcat 680

                                  
Query: 481 agacataaaataaaaaagcattc 503
           |||||||||||||||||||||||
Sbjct: 681 agacataaaataaaaaagcattc 703


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)