BAC Information

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BAC

Clone NameMSMg01-456L18
Chromosome4 (Build37)
Map Location 65,204,753 - 65,366,484
singlet/doubletdoublet
Overlap geneAstn2, Trim32
Upstream genePappa
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456L18.T7 (MSMg01no456_l18.b1)MSMg01-456L18.TJ (MSMg01no456_l18.g1)
ACCAG542967AG542968
length722747
length of high quality
(start - end)
235 (74 - 308)242 (77 - 318)
definitionCHROMAT_FILE: MSMg01no456_l18.b1 PHD_FILE: MSMg01no456_l18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:39 2005CHROMAT_FILE: MSMg01no456_l18.g1 PHD_FILE: MSMg01no456_l18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,204,753 - 65,204,987)(65,366,244 - 65,366,484)
sequence
TTCTATXXXXXXXXXXXXXXXXXXXXXXXTATTCCAAGAGGATGCGCGGA
ATTCCACCTAACACAATATGTCTTAAATAAGACTTTCCCTTAAATCTGAG
AGTGATCATGTTCTTTCAGACACCATGACACTAGTCACTCCTACCACCAC
ATCTCTGCACCTATCTTACCCATCAAATTCTAATCCTAATTGCTACTAGA
ATCAAAGAACCCACAGTCTTCCAGGAGGATTCTCCTAGGACCTTGTGTGA
TCTTAGTATTTACTGAACAAATGAATGTTCACTTAAAATTGATCATTAAT
ACCAGATGTTTTTTAGAACTTGAAAGGAGTTTCCTGCACCCAGTGGATAA
CAGGCTCAAATCTGTACAGTATTGTCTTCTTCTCCTTTAGGTTTGTTTTG
GTATGGAGAATGCTAACAATATGGATATGGTGCTTAAGAAAATGCCCTGG
TTAAGTCACTCCCTTTACATTGACATTTCGTAGCTTTGGAGAATGAGAAT
GTAGGACTCAGCTCTTTAAAGCTCAAAAATTCCAGAAAAAGTTGATCTTT
GGCTTCTTTATGCTGGGCCAGCCATGAGTATTTCTTTTCCTTTTATGTTA
CTTTCTCTATGCTCTACAAGTGGATTGTGCACATTACCTATCCCCTAGTA
TGCCTTATGTCCCCGATGGCCCTACATATTTTTTTTTACATTTTTCGCCA
TTCCTTAACCGTCTCTGAACAN
NAACCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGAAACTCTTAGGCAAATGAATG
GAACTAAAAAACTCCCACCTTCCTTATTTTACTCCTCCCATACCACTCCT
CAGAAATGCTAGTCTAAGCTTAGACCTCCCATGAAATTTACAGTTACCAA
AACTGGTTAAGAGGTTAGAGAACAGGATGAGAGGATGTGACTTCAAATCC
TAAACAAGTCTGTTTAATATGTAAATTTGATGCCATTGTCATTAAAGGGA
TAGAAGCCTTTGATTTATATTTTGTAGGCAAAATACTGAGCACAGAGTAA
GCAGGACCTACTCATTCCAATCATGCATGCTTCTCTGTTTTACTATGCCT
CTCAGCACTCATTCCTTCTCTTCACTTGTTTGTAAGTTTCTCAAGATCAT
TTGAGCACATATTCTAAACTCTGAGACAGAGTAGCCTATGAACACAGATG
TTCGATATGATGAATAAAGTTGTGAATGAAAATTGATGTATGAATGACAA
TAAAAGTCAGTTATTCATTGGTGGAATTGGACACATCGATATATGATAAA
TATGTAAATAACACATATTTAAAGGAATGCCTCCATGAATGCATTACCCT
TTTAATATCTGAACTTTGTCATTGAAAATACATTACCTGATTTCCCTTTA
ACCTGTATGTTCTCACTTATTTTTCACCCTGTATGTATAGCATTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_l18.b1 MSMg01no456_l18.b1 CHROMAT_FILE:
MSMg01no456_l18.b1 PHD_FILE: MSMg01no456_l18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:39 2005
         (235 letters)



>mm_chr4_65204553_65205187
          Length = 635

 Score =  424 bits (219), Expect = e-123
 Identities = 231/235 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaataagactttcccttaaatctgagagtgatcatgttctttcagacaccatgacacta 60
           |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 201 taaataagactttcccttaaatctgagactgatcatgttctttcggacaccatgacacta 260

                                                                       
Query: 61  gtcactcctaccaccacatctctgcacctatcttacccatcaaattctaatcctaattgc 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcactcctaccaccacatctctgtacctatcttacccatcaaattctaatcctaattgc 320

                                                                       
Query: 121 tactagaatcaaagaacccacagtcttccaggaggattctcctaggaccttgtgtgatct 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 tactagaatcaaagaacccacagtcttccaggaggattctcctagaaccttgtgtgatct 380

                                                                  
Query: 181 tagtatttactgaacaaatgaatgttcacttaaaattgatcattaataccagatg 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagtatttactgaacaaatgaatgttcacttaaaattgatcattaataccagatg 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no456_l18.g1 MSMg01no456_l18.g1 CHROMAT_FILE:
MSMg01no456_l18.g1 PHD_FILE: MSMg01no456_l18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:39 2005
         (242 letters)



>mm_chr4_65366006_65366647
          Length = 642

 Score =  443 bits (229), Expect = e-129
 Identities = 238/241 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgaaactcttaggcaaatgaatggaactaaaaaactcccaccttccttattttactcct 60
           |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 479 atgaaactcttaggcaaatgaatggaactagaaaacttccaccttccttattttactcct 420

                                                                       
Query: 61  cccataccactcctcagaaatgctagtctaagcttagacctcccatgaaatttacagtta 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 419 cccataccactcctcagaaatgctagtctaagcttagacctcccgtgaaatttacagtta 360

                                                                       
Query: 121 ccaaaactggttaagaggttagagaacaggatgagaggatgtgacttcaaatcctaaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ccaaaactggttaagaggttagagaacaggatgagaggatgtgacttcaaatcctaaaca 300

                                                                       
Query: 181 agtctgtttaatatgtaaatttgatgccattgtcattaaagggatagaagcctttgattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 agtctgtttaatatgtaaatttgatgccattgtcattaaagggatagaagcctttgattt 240

            
Query: 241 a 241
           |
Sbjct: 239 a 239


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)