BAC Information

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BAC

Clone NameMSMg01-456M03
Chromosome4 (Build37)
Map Location 50,266,494 - 50,266,733
singlet/doubletsinglet
Overlap genenone
Upstream geneE130309F12Rik, LOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2, LOC666663
Downstream geneLOC100040979, LOC666681, LOC100040814
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456M03.T7 (MSMg01no456_m03.b1)MSMg01-456M03.TJ (MSMg01no456_m03.g1)
ACCAG542984AG542985
length787780
length of high quality
(start - end)
319 (44 - 362)242 (82 - 323)
definitionCHROMAT_FILE: MSMg01no456_m03.b1 PHD_FILE: MSMg01no456_m03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:41 2005CHROMAT_FILE: MSMg01no456_m03.g1 PHD_FILE: MSMg01no456_m03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTTCGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTC
TGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATGTTAGTCCCCTA
TCCGATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTT
TGTCTTATTGATGGTGTCTTTTGCTTTGCAGAAGCTTTGCAATTTTATGA
GGTCCCATTTATCGATTCTCAATCTTATAGCACAAGCCATTGCTGTTCTA
TTCAGGATTTTTTTTTCCTGTACCCATATCTTCGAGGCTTTTCCCTACTT
TCTCCTCTATAAGTTTCAGTGTCTGTGTTTATGTGTAGTTCCTTAAGCCC
CTTACATTCGACCTTATTATGTGGTGATAAGTATGGTATTATTTGCATTC
TTTTTTCTGCTTTTCACTCTTCTGCACCCTCCCTCTATTTGTTCATAATG
CGTCCCTCTTTCCCCCGCGATTGTCTTTACTTTCTTCTGTTACCTCCTTT
GCTCCTTCTTTCTCTTCCTTCTGCTTCGCTTCCCCCTCCTCCCATTTACC
CGCACTCTTCCCTTTTTTTTTTTTTTTCTCCCCTCCTTTCTTTTTTGCAT
TTCATATTCTCCCTCCTTTTCCCCTGTTTTTCCCTGCTCCCTATACTGGT
GTGTGCCTACTTCGATTTCACTCTTCTTTACTATACTCTTCTGTCTTTAT
TAGTCCCCCCCCAACTTTTTCTTTTCTCTTACCCTGT
AAACACGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGCGAGTTCTGCTGAGA
AGTTCAATTGTTTTTCTATTTGTATTGCCACATATATAAGGCTTAGAAAC
TTTTTTGATGAAAAAGTTACAGTGAAGACATAGATATTTAACTTGAAACC
CATGTTTAGACCTTTAACTTGATGATGATAGTGAAAATTACGATGATATA
ATAAGTTAATGTGTGAAAACATCTTCACAATGTATCATTAAAAATACTGG
ACCAAACCTAAAAAATATTGCTGTTATTATTATTATATTCTACCAGAAGT
CCAAAATGCACTTTCAGATACTGACCATGTTATTAAATCTCTTGGACAAG
AATATACTGGATGTACAGAATTTTTATATATGGACTACTTTTAAAGACAC
ATGTTCATACATTGTCAAATCACTTTATATCCACACCCACTCGTGATGCT
CTATGCGCCATATCGTGACTTGTAAACCATTCCCCCTTTTCCGGGCTTTT
TTGCCCCCCATCCTTTTGTTCTTATGATCCTCTCGTCCTCATTTTGACCT
GTTTTTTTCTCCTTTCTTTCTATCTTCGTTCCTTTTGTCTCTGTCTTTCT
TCTTATTTGTCTCTTGTTTCCATGTTTCCCTTTCTTCCTTCTCCCCTTCT
CTTCCTTCGTCCATCTCTCCCTATCACCTTTCTTCCTCCCCATTTCTCCC
CTTCCTTTCCTCCACCTCTTACACCCTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_m03.g1 MSMg01no456_m03.g1 CHROMAT_FILE:
MSMg01no456_m03.g1 PHD_FILE: MSMg01no456_m03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:41 2005
         (242 letters)



>mm_chr4_50266294_50266936
          Length = 643

 Score =  426 bits (220), Expect = e-124
 Identities = 235/240 (97%), Gaps = 1/240 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgcgagttctgctgagaagttcaattgtttttctatttgtattgccacatatataagg 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 440 attgcgagttctgctgagaagttcaattatttttctatttgtattgccacatatataagg 381

                                                                       
Query: 61  cttagaaac-ttttttgatgaaaaagttacagtgaagacatagatatttaacttgaaacc 119
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 380 cttagaaactttttttgatgaaaaagttacagtgaagacatagatatttaacttgaaact 321

                                                                       
Query: 120 catgtttagacctttaacttgatgatgatagtgaaaattacgatgatataataagttaat 179
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 320 catgtttagacttttaacttgatgatgatagtgaaaattacgatgatataataagttaaa 261

                                                                       
Query: 180 gtgtgaaaacatcttcacaatgtatcattaaaaatactggaccaaacctaaaaaatattg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gtgtgaaaacatcttcacaatgtatcattaaaaatactggaccaaacctaaaaaatattg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 643
Length adjustment: 9
Effective length of query: 233
Effective length of database: 634
Effective search space:   147722
Effective search space used:   147722
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)