BAC Information

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BAC

Clone NameMSMg01-456M22
Chromosome4 (Build37)
Map Location 102,561,241 - 102,561,575
singlet/doubletsinglet
Overlap geneSgip1
Upstream geneC130073F10Rik, LOC384033, LOC381535, LOC332923, LOC100039834, LOC381536, LOC433739, Pde4b
Downstream geneTctex1d1, Insl5, Wdr78, Mier1, Slc35d1, 4921539E11Rik, 4930456L15Rik, Oma1, LOC665451, LOC100039940, EG665460
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456M22.T7 (MSMg01no456_m22.b1)MSMg01-456M22.TJ (MSMg01no456_m22.g1)
ACCAG543022AG543023
length822793
length of high quality
(start - end)
66 (124 - 189)339 (82 - 420)
definitionCHROMAT_FILE: MSMg01no456_m22.b1 PHD_FILE: MSMg01no456_m22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:45 2005CHROMAT_FILE: MSMg01no456_m22.g1 PHD_FILE: MSMg01no456_m22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXAATTCAATACGGATCCG
CGGAATTCTAATTTGCAGGAAATTTGCTTGGTCTGTGTGTGTGTGTGTGT
GTGTGTTTATTCAGACTTGCCCAAAAGAGTTTTGCCTGGCTATATAACAC
CTACTTTTAAAATATCTCTGATCAAAATTTATATTTGAAAAAGGAGAAGA
TGCAAATAGTTGCATATTTCTCCTTACGTATGAACATATTAACATCTTTA
TTTTAAGAGTGCGCTGGCCACATGGTATCCGCTAAATCCATGTCGGATGA
TGTGATCTACACTATTTATCTTTGTGAGCTTGCCATATCTATCTGAGTGT
CGTATCTCTATATTCCCCTCCGCCTATTTGCCATACCTCGCCATTTTCTT
TTTTTTTTTTGTTTTTACCCCCCACCCATCCTATGCCCGTATCTCGCTTT
CTCAATTCTTCCCTTTATTTTTTACATCTCCTTTTCGTCTTTTTTTTCCT
ATCTCATATTTTCTCCTCCCCTTCTTTTTTATCCTTTAACTTTCCTTTTT
TTATCATTTATTTCCTACCTCTATGACTTTTATTTCGTTTGCTTATTCCC
CCCATCCCATCCTATAAATCCTATTCTTCCCCCTACTCATATTTATTTTC
TTACTTCACTTATTTCTTTCCTTTCTATTATCTCTTTTCTTATCCTCCCT
TTCCCTCTCTTTCATGTCCTTTATCCCTCCGATATTTCCTTTTATAAACA
TTCTATTTATATTACCCCTCCCTATCTATACTCCGCATCCATTTCTTTTT
TTTTTTCCCACCCTTTTCTCCT
NTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGGAAAAGAGAGTCATC
GGTGGTGGGGAGGAGAGCTCCAGGCTCCTGCACACCAAGAAAGATGAACC
ACCTGGTTCTATGCCCTGTACAGACCTCCTGCACTCAGGGACCTAAAGGG
TAGATGCTCAACTTGCATTGCTCACCAAGTCAGCTTTAGGCAAACTCGAT
TTGGATTGGTTTAGGGATGCCAAGGGTGGGACATTAAAGCTTCCAGTCCT
TTCTGCCAAACCTCTGCAGACATTGCTATATATCCCAGAGGTAGTTTAAG
AATCAACAGCACCCAGACCCACCAGAACAAGTTACAACTAAGACAGTGGT
GCTGTTTTGGTTTTTTTGTTCAAGGCCCCGAACCAAAATGTTGAGAAAAT
GACGCAAAACTTTTTCAAAATATGGCCTTGCTCTTCTCTACTTTTTAAGA
ACTCCTTTTCCTGTAACGTTTTTATATGCTCCGCGTTTTGTCTTTTTCCT
TTACCTTATTTGCCCTTTTTCTGTCCAATTTTTTCCCTTCTTCCCTTCCC
TTCTTCCATTTTTCCCTTCCTTTTCACTCTCTTATTTCTTTTCTTTTTCA
CCTACTTTTTCATCTTTTTTTTTCCTCTCCTTCCCCTCTTTCTCCCCCTC
TTCTTTCCCCCTATCCTTTTTTCCCTTTATCCTCTTTCTTCCTCCTCTTT
TCCCCTCCCTCTTTCGTTTCTTCCTTCCTTTCTTCTACTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_m22.g1 MSMg01no456_m22.g1 CHROMAT_FILE:
MSMg01no456_m22.g1 PHD_FILE: MSMg01no456_m22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:45 2005
         (339 letters)



>mm_chr4_102561041_102561779
          Length = 739

 Score =  571 bits (295), Expect = e-167
 Identities = 325/335 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtggaaaagagagtcatcggtggtggggaggagagctccaggctcctgcacaccaagaa 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 agtggaaaagagagtcatcagtggtggggaggagagctccaggctcctgcacaccaagag 260

                                                                       
Query: 61  agatgaaccacctggttctatgccctgtacagacctcctgcactcagggacctaaagggt 120
           ||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 261 agacgaaccacctggttctatgccctgtacagacctcctgcactcagagatctaaagggt 320

                                                                       
Query: 121 agatgctcaacttgcattgctcaccaagtcagctttaggcaaactcgatttggattggtt 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatgcgcaacttgcattgctcaccaagtcagctttaggcaaactcgatttggattggtt 380

                                                                       
Query: 181 tagggatgccaagggtgggacattaaagcttccagtcctttctgccaaacctctgcagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 tagggatgccaagggtgggacattaaagcttccagtcctttctgccaaaactctgcagac 440

                                                                       
Query: 241 attgctatatatcccagaggtagtttaagaatcaacagcacccagacccaccagaacaag 300
           ||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 attgcaatagatcccagaggtagtttaagaatcaacagcacccagacccaacagaacaag 500

                                              
Query: 301 ttacaactaagacagtggtgctgttttggtttttt 335
           |||||||||||||||||||||||||||||||||||
Sbjct: 501 ttacaactaagacagtggtgctgttttggtttttt 535


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)