BAC Information

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BAC

Clone NameMSMg01-457L18
Chromosome4 (Build37)
Map Location 32,750,489 - 32,750,734
singlet/doubletsinglet
Overlap geneMdn1
Upstream geneMap3k7, LOC665218, LOC665228, LOC665232, Bach2, Gja10, Casp8ap2
Downstream geneLyrm2, Ankrd6, LOC665298, Rragd, 4933421O10Rik, Ube2j1, LOC100039142, Gabrr2, Gabrr1, Acy1l2, Srrp, Pnrc1, Rngtt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-457L18.T7 (MSMg01no457_l18.b1)MSMg01-457L18.TJ (MSMg01no457_l18.g1)
ACCAG543730AG543731
length846814
length of high quality
(start - end)
39 (81 - 119)249 (83 - 331)
definitionCHROMAT_FILE: MSMg01no457_l18.b1 PHD_FILE: MSMg01no457_l18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:03 2005CHROMAT_FILE: MSMg01no457_l18.g1 PHD_FILE: MSMg01no457_l18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAGTCAATAATTGCGGCGCTAAACGACGCACATTTTCAGAGCACCGCGG
AANNCNACAGTTTACACAACTTAGCAGNCNGCTTTACGGGAACCTTTATT
ACCGCGACCCGCAGTTCTGGCTCTGGAATGAGGGATCTTCCTTGCGCCAG
TCCCGAGTTTTTTCTCGTCCCGGGTTTCGGCTCCAATTGTTATTAGACGC
GTTCTCACGATCGGCCAGGAAAGACGCAACAAACCAGAACCTTCAGCGTT
TTTTCTTTATTGCTTACATCTTCAGGAGCAGGAGTGCTCGAAGCAACAGA
GAGAGAAAACGAATTTTTTTTTTTTACTAAGGAGATTTATCCTTCGGCGA
GTACTTTTCTTCCTCTGACTGCTTGTAGCCTATTCGTCTCATCTGATTTC
TCCTGTTCTTCTTTTTTCCCCCCACCCCTCTGCTTTATCTCTCTGTCTTC
AGTGCCTCTCATCATCTCGACTCTCCTCTTTATTTCCTTTCTGCCTGCCA
CTCCATCATCTTCTTACTCGCCTCTCTCCGTCTGTTCCGTTTTTTTCTCG
TTCTTTCCTCTATTCTCGCTTTTCTTCACTTTTCTTTCCCCTCTTTCTTT
TCTCTTTTTCTTTTTTCTTTCCCTCTCTCTTTATTCTCCTTTCTGCTTCT
TTCTCCCATCTCTTCACTTCCCACTTCCTTTTCATCCTGCATTTTCGTCA
TGGATCCATTTCTTTTTTTTTTTCTTCTTTTATATAATCTATTCTTGCTT
TCTGTACTGTCTTCTTTTCCTTTTCCCTCCTACCAACTTCTTATATTTAT
ATTCCTCCTCTTTCATCTAATCGATTTCTTCTTAATATTATTTTTA
NNNNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGTGTTCATCCTTGGTG
TCAAGTACTTACCCCTGAGCCATCTCCTCACCAGCTTTTACTGGTTATCT
GGTGTGACCTCAGTCTGTGGTCCTCTCCCAGTAGTCTACCAAGTGATGGG
TCTACAGGTGTGTACCAGTATTCTTGGCTTAGCTGCATGAAGTGTCTGAG
AAAACAGCCGTGATGTCCCAGTCAGCTCAGAATCTGGCAGATGTGCAGAT
GAGGTAGTTCTGAGGTTACATGCTGTTGTTTTTTTTTTTAAGGAAGCAGG
AATTGTGGCAACTTGGAAATCTCACCTCTAGAGAATGTGTTAGAGATTCA
TTAATTAATTAATTTGGAATTTTCCACCACCACCAAATTTTATGTTCTTT
TTGTTTGTCCTTTGTTTTTTGTCTTCTAACTTTAAGACCCCAAGTTACTC
TTTTGCTCTATTTGCCTATATTTTCCTTCCCTTATTCGGTTTTTGTTTTT
TCGCCTCTACTTATTTATTATTCTTTTTCTGTTCCTCCTGTATTTTTTCT
GCTTCCTTTTTCTTTTTTGTCCCCCTTTTTCCTTCTTTCTTTTCCCAATT
CTATCTCTTTTTCTCCCTTTTACCTTTTTATTCTTCCCCATCTCTTTTTT
TTTTTTTTTTTCCTCTACTTCAATTTTTTTCCTTCTGATTCTCTTTCACA
TTTATTTTTCTCTATTTTTTCTCTACTATAATACTTTTTCTTTGTTCTTT
CCCTTTTATTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no457_l18.g1 MSMg01no457_l18.g1 CHROMAT_FILE:
MSMg01no457_l18.g1 PHD_FILE: MSMg01no457_l18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:04 2005
         (249 letters)



>mm_chr4_32750289_32750937
          Length = 649

 Score =  422 bits (218), Expect = e-122
 Identities = 239/246 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtgttcatccttggtgtcaagtacttacccctgagccatctcctcaccagcttttact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgtgttcatccttggtgtcaagtacttacccctgagccatctcctcaccagcttttact 260

                                                                       
Query: 61  ggttatctggtgtgacctcagtctgtggtcctctcccagtagtctaccaagtgatgggtc 120
           ||||||||||| |||||||| |||||| ||||||||||||||| ||||||||||||||||
Sbjct: 261 ggttatctggtctgacctcactctgtgatcctctcccagtagtataccaagtgatgggtc 320

                                                                       
Query: 121 tacaggtgtgtaccagtattcttggcttagctgcatgaagtgtctgagaaaacagccgtg 180
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 tacaggtgtataccagtattcttggcttagctgcatgaagtgtctgagaaaacagctgtg 380

                                                                       
Query: 181 atgtcccagtcagctcagaatctggcagatgtgcagatgaggtagttctgaggttacatg 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 atgtcccagtcagctcagaatctggcagatgtgcagataaggtagttctgaggttacatg 440

                 
Query: 241 ctgttg 246
           ||||||
Sbjct: 441 ctgttg 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)