BAC Information

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BAC

Clone NameMSMg01-458B22
Chromosome4 (Build37)
Map Location 37,640,605 - 37,641,113
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042132, LOC545600, LOC621458
Downstream geneLOC277771, LOC100039448, LOC665520
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458B22.T7 (MSMg01no458_b22.b1)MSMg01-458B22.TJ (MSMg01no458_b22.g1)
ACCAG544024AG544025
length746776
length of high quality
(start - end)		516 (54 - 569)574 (75 - 648)
definitionCHROMAT_FILE: MSMg01no458_b22.b1 PHD_FILE: MSMg01no458_b22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:36 2005CHROMAT_FILE: MSMg01no458_b22.g1 PHD_FILE: MSMg01no458_b22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:30:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTTTNTTTCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGA
GAATCCGCGGAATTCTTTTAGATTGACTCAGATCAATTTTGTTAAGCCTA
AAAATATTTCTAGGCAAAAACAAACCACAAAATTTTTATTGACATCATTG
CTGTCTTGATACATATCATACAATGAGTAATTAGTTGTAAATTAGTGTAT
TATGATACTTGATGGAGAAATGGATATAAACTTTCTTTACAATTTGACTT
TTTGATAATAGAAGAAATATTGAAGAATGGAATTGAAATGTTTTTAATTA
TGGTAACATCATTTTTCATGAGACTTATGTGTTTACTTTTATATGTGTTC
ATATATTACACTGTAATTTGCTATACCAAATGTAATTTGCTTACATGAGA
AGTCTATTTATAGTTAAGAATCAGAATTAAAGCTGGATGTGGTGGCACAT
GCCTTTAATCTCAGCACTAGGGAGGCAGAGGCAGGCAGATTTCTGAGTTC
GAGGCTAGCCTGGGCTACAGAGTGAGTTCCAGGACAACCAGTACTACATA
GAGAAACCCTGTCTAGAANACCAACAAACAAACAAAAAAACAAGAAAACA
AAAACAAAAAAAAGAAAAAAATCCGAATTAAACATTTGATATTATAAGAT
GTTAGAAATTTGGGNANATTTTCTTTCTTTCCTTCTTTCTTTCTTTCTTT
CTTTCCTTCCTTCCTTCCTTCTTTCCTCCCTTCTTTCTCTCTTCCC

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTATGTGCACCAAGCTAAACCACCA
TAACATATAAGTAGAATACCTATCTCAGACACATTTAGGCTCCATGATTT
CTCCTTCAGATGCTCTGAGGTTTAATAAACCCTGCTTACTTGGTTATAGA
GGCCATGTTTTTAAGATGCCCTCCACTGAATGTTTGGCTGTGAGTCTCTG
CATCTGCTCCCATCAGTTTTAGGATGAAGCTTCTCTGAGGACAATTGGGT
TATGCACATTTCTATGAGAATCACAGAATATGATTAGGAATCATTTCATT
AACTTTTTTTTCTTTTGTCTACCTAGTGATGACACTAGAATACCCAGATT
TTAGTTCTAGGCTATCCAGGCACTGTTGGGCATAGGGTCCCTCTAATTTC
TCATGGTGTGGGTCTCTAGTTAAATCAGTCACTTGTTGGCCAATCCCACT
AGTTCTACACAAATATTGCTCAAAATGCACCATTTTGCATGCAGGATATA
TTGTAGATCTAAGTTTTTGTGACTGGTTTGGTTCCCAGTCCTAACACTGG
AAACGTTGCCTAGTTACAGACTTTGCCTGCTTCAGGCTCTTTACTCCCAT
TAGAAGGAGTCCTCACTAGAATCAATCTTGCATATTCCAGGGAGGTTGCA
CTGCCCTTAGTTTTCCCCAGGGGAATGCCCCCATATTCTCATGGGACTCT
CTCTCTCCCAAACTTCTCCCCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_b22.b1 MSMg01no458_b22.b1 CHROMAT_FILE:
MSMg01no458_b22.b1 PHD_FILE: MSMg01no458_b22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:36 2005
         (516 letters)



>mm_chr4_37640537_37641452
          Length = 916

 Score =  830 bits (429), Expect = 0.0
 Identities = 490/511 (95%), Gaps = 4/511 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcttttagattgactcagatcaattttgttaagcctaaaaatatttctaggcaaaa 66
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 577 gaattcttttagattgattcagatcaattttgttaagcctaaaaatatttctaggcgaaa 518

                                                                       
Query: 67  acaaaccacaaaatttttattgacatcattgctgtcttgatacatatcatacaatgagta 126
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 acaaaccacaaattttttattgacatcattgctgtcttgatacatatcatacaatgagta 458

                                                                       
Query: 127 attagttgtaaattagtgtattatgatacttgatggagaaatggatataaactttcttta 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 attagttgtaaattagtgtattatgatacttgatggagaaatggatataaactttcttta 398

                                                                       
Query: 187 caatttgactttttgataatagaagaaatattgaagaatggaattgaaatgtttttaatt 246
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 397 caatttgactttttgataatagaagaaatattgaagaatggaattgaaatgtctttaatt 338

                                                                       
Query: 247 atggtaacatcatttttcatgagacttatgtgtttacttttatatgtgttcatatattac 306
           ||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 337 attataacatcatttttcatgagacttatgtgtttactttaatatgtgttcatatattac 278

                                                                       
Query: 307 actgtaatttgctataccaaatgtaatttgcttacatgagaagtctatttatagttaaga 366
           |||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 277 actgtaatttgctataacaaatgtaatttgcttacttgagaaatctatttatagttaaga 218

                                                                       
Query: 367 atcagaattaaag-ctgga-tgtggtggcacatgcctttaatctcagcactagggaggca 424
           ||||||||||||| ||  | ||||| ||||||  ||||||||||||||||||||||||||
Sbjct: 217 atcagaattaaagcct--attgtgggggcacacacctttaatctcagcactagggaggca 160

                                                                       
Query: 425 gaggcaggcagatttctgagttcgaggctagcctgggctacagagtgagttccaggacaa 484
           || |||||||||||||||||||| |||| |||||||||||||||||||||||||||||| 
Sbjct: 159 gaagcaggcagatttctgagttccaggccagcctgggctacagagtgagttccaggacag 100

                                          
Query: 485 ccagtactacatagagaaaccctgtctagaa 515
           |||||||||||||||||||||||||||||||
Sbjct: 99  ccagtactacatagagaaaccctgtctagaa 69


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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