Query= MSMg01no458_d04.b1 MSMg01no458_d04.b1 CHROMAT_FILE:
MSMg01no458_d04.b1 PHD_FILE: MSMg01no458_d04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:43 2005
(242 letters)
>mm_chr4_44650120_44650761
Length = 642
Score = 426 bits (220), Expect = e-124
Identities = 235/242 (97%), Gaps = 4/242 (1%)
Strand = Plus / Plus
Query: 1 ggtttggaagccgtgcattctgccacacttaatgacatggattactggggaccctgaatt 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggtttggaagccatgcattctgccacacttaatgacatggattactggggaccctgaatt 260
Query: 61 tacccctgctcatcctacagctcctcccatgtcttccctctacctgggcagtatgagggc 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 tacccctgctcatcctacagctcctcccatgtcttccctctacctgagcagtatgagggc 320
Query: 121 ttagaatgctgtaccttaaaccatccccctctcaggactgtctgtctgtctgtcatgtat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 ttagaatgctgtaccttaaaccatccccctctcaggactgtctgtctgtctgtcatggat 380
Query: 181 ccccctctcaggactgtctgtctgtctgtctgtcatagctacctcctttcctacttgttt 240
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 ccccctctcaggactgtctgtctgtctgtc----atagctacctcctttcctacttgttt 436
Query: 241 ac 242
||
Sbjct: 437 ac 438
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space: 147489
Effective search space used: 147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no458_d04.g1 MSMg01no458_d04.g1 CHROMAT_FILE:
MSMg01no458_d04.g1 PHD_FILE: MSMg01no458_d04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:30:43 2005
(594 letters)
>mm_chr4_44790594_44791584
Length = 991
Score = 1083 bits (560), Expect = 0.0
Identities = 585/598 (97%), Gaps = 11/598 (1%)
Strand = Plus / Minus
Query: 1 attcctttgagccttctgaggcctgttttcaactgctccagaaggggtgggctagtcaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 attcctttgagccttctgaggcctgttttcaactgctccagaaggggtgggctagtcaca 732
Query: 61 cacacttgttagccttctttacagtaacaggtcaaattagaaatggtcacatacactgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 cacacttgttagccttctttacagtaacaggtcaaattagaaatggtcacatacactgta 672
Query: 121 atataaagcagcacttactttacggctgcccagaaaagaatgctagcgtagttatatatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 atataaagcagcacttactttacggctgcccagaaaagaatgctagcgtagttatatatg 612
Query: 181 gctcataaagtatcttgatgactgaaatatgattacagttatgagaatttgtccaaataa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gctcataaagtatcttgatgactgaaatatgattacagttatgagaatttgtccaaataa 552
Query: 241 cattatt----atttttagaactttaaaaaccaaattcagaataaactcaaattaacaaa 296
||||||| | ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 551 cattattaaaaa----tagaactttaaaaaccaaattcagaataaactcaaattaac--a 498
Query: 297 aaaaaaaacactaaacaatattcaagaacaaacattaaactataaaaaaattaatttcac 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aaaaaaaacactaaacaatattcaagaacaaacattaaactataaaaaaattaatttcac 438
Query: 357 ttatttttttctagattaatcaagtttttagcagccaactaaatgaaaatatgctttgtg 416
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tt-tttttttctagattaatcaagtttttagcagccaactaaatgaaaatatgctttgtg 379
Query: 417 aattttcacaagctttctcaacatgaatcttcaaagacattttagagcaaagatacaaat 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aattttcacaagctttctcaacatgaatcttcaaagacattttagagcaaagatacaaat 319
Query: 477 ttacctgaaagcagctttctatttcatccttttctgaaatataatttacctcccacccca 536
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 318 ttacctgaaagcagctttctatttcatccttttctgaaatacaatttacctcccacccca 259
Query: 537 acaaagaagccaatgcaacaccagcaatgggataaccaaggatacaatctgctactct 594
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 258 acaaagaagccaatgcaacaccagcaatgggataatcaaggatacaatctgctactct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 991
Length adjustment: 10
Effective length of query: 584
Effective length of database: 981
Effective search space: 572904
Effective search space used: 572904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
