BAC Information

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BAC

Clone NameMSMg01-458K04
Chromosome4 (Build37)
Map Location 11,486,673 - 11,486,796
singlet/doubletsinglet
Overlap geneLOC100039847, E130016E03Rik
Upstream gene1700123O12Rik, LOC383991, LOC100039656, LOC545589, 2610301B20Rik, LOC383992, LOC100039746, Plekhf2, 2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8, Dpy19l4, Rbm35a, LOC634834, 1110037F02Rik
Downstream geneLOC100039862, Gem, Cdh17, Ppm2c, Tmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b, 6720467C03Rik, LOC545592
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-458K04.T7 (MSMg01no458_k04.b1)MSMg01-458K04.TJ (MSMg01no458_k04.g1)
ACCAG544418AG544419
length755742
length of high quality
(start - end)
468 (83 - 550)124 (120 - 243)
definitionCHROMAT_FILE: MSMg01no458_k04.b1 PHD_FILE: MSMg01no458_k04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:17 2005CHROMAT_FILE: MSMg01no458_k04.g1 PHD_FILE: MSMg01no458_k04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:31:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCGACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCATCATAG
CCGGNATTCATAAGNGCATAGCAAAAAAGAAGCTCAGATGAGGGGCTGGA
GAGATGGCTCAGAGGTTAAGAACACTGCTCTTCCAGAGGCTCTGAATTCA
ATTTCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCCGAT
GACCTCCTCTGGTGTGGCTGAAGACAATGACAGTGTACATAAAATAATAA
ATAAATCTTAAAAAAAAAAAAAACCAGCAGCAGCTCTGATGAAGGACTCA
TACACATCTTCTCTGAAAGTGTGACATCCTTTTCTATCAAATATATGAAG
TACACGCCTGTAATCCCAGCCCTCAGGAGGCAGAGGCAGGAGCAACGCCC
GTTAGTTTCAGGCTGGTCCTGTCTGTTCTATATGTGGAGTCTTAGGCAGT
CAGAGTTATTTAGTAAGACCAGAGTAAACACAATAGAATAAATCAGGGCA
CACACTCCCCAGAATACAATGTGATTCTTTAGTAGTACCTATCTGGGGAA
CTGTAATTAAAAGCTAGGCATACTGCAAGCTGTGGACTTCAGGGAAATGT
ACTCAACTCCTTTACAGGAGGTCCACTCCACCTAGTTTTCTCTTCATATT
ATCTCACATTCCCCACTGTGAAATTTAATAATGGGAATGGAAAAGCCCAG
ATATCACCCTCCTTGCGCAGTTTCAACTTTCTTAAAAATTTTATCCTCTT
AAGTC
CGCATTGAAGTGGTAGGGCGGGNGGNCGCCTGTTTCGTACGCGGGAGGGT
GAACTATAGAAGTAACAACACAGCGGAAAAAGCNNGAACACAGNACTCAA
AACTTGCCGGATATTATCACTTATAATTACTGGTGCCTGTTTAATCCACA
AAATCCTATGAAATCAGAAACAACAAAGGTCCCAGGAGAGGAAAGACAAG
AGGGATTATAGAATCATAGCCAGAATCTCTGCCTTCCTCTGGACTATTTT
GATGAAGAGGGTGTGGCAACTTCTAGGATGCAAGAAAATAAATAAAACTC
CAACAGCTAGCATTTTTTTGTTTTANANCNGCNCANTGGCTTCCAGCCAC
GNGGGGTAATAAGACCTCCATTTCATACTGGAAATTCCCCTTAGACTTTG
GGACTCCAATCCACCTACCTACAAAATCCTCCATAATTAATGTAAATGGT
GTGTTTTTGCTTGTTTGTTGAAACCAGGAGCGGAGAGAGGGCGAGAGAGA
ACTAGTGGGTGGGTAATTCGCCTAGGGGAGGTGCTAGATGGTTCCACAAG
CTCTTGGCTGACACCTGATGTTCTCTGGCCCCAGGCGGCCTCGGGGGCCG
TGGCCTCCGAGATCGCTCGGTTCGAAGGACCCGCCCCCCTGCCCCCTTGT
CTTTTTTCTAGTGTGCTCTCGCAGCCTCGCCAAGCTTCCCCGGTACCCGT
GCCATTTCTGCTTCAGTCCTCTGTATGAGCCTCCCCGTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no458_k04.g1 MSMg01no458_k04.g1 CHROMAT_FILE:
MSMg01no458_k04.g1 PHD_FILE: MSMg01no458_k04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:31:17 2005
         (124 letters)



>mm_chr4_11486473_11486996
          Length = 524

 Score =  232 bits (120), Expect = 5e-66
 Identities = 123/124 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttataattactggtgcctgtttaatccacaaaatcctatgaaatcagaaacaacaaagg 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cttataattactgttgcctgtttaatccacaaaatcctatgaaatcagaaacaacaaagg 265

                                                                       
Query: 61  tcccaggagaggaaagacaagagggattatagaatcatagccagaatctctgccttcctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcccaggagaggaaagacaagagggattatagaatcatagccagaatctctgccttcctc 205

               
Query: 121 tgga 124
           ||||
Sbjct: 204 tgga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 124
Length of database: 524
Length adjustment: 8
Effective length of query: 116
Effective length of database: 516
Effective search space:    59856
Effective search space used:    59856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)