Query= MSMg01no460_a03.b1 MSMg01no460_a03.b1 CHROMAT_FILE:
MSMg01no460_a03.b1 PHD_FILE: MSMg01no460_a03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:08 2005
(625 letters)
>mm_chr4_13374303_13375326
Length = 1024
Score = 1147 bits (593), Expect = 0.0
Identities = 604/609 (99%), Gaps = 5/609 (0%)
Strand = Plus / Plus
Query: 20 gaatctcgaatggctgagaagcccttacagaaaagttcgaagtccttagtcatcagggaa 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 gaatctcgaatggctgagaagcccttacagaaaagttcgaagtccttagtcatcagggaa 279
Query: 80 atgcaatcaaaacatctctgcagtactgaaaaaa-ctttctttgtcctggcatagttctg 138
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 280 atgcaatcaaaacatctctgcagtactgaaaaaaactttctttgtcctggcatagttctg 339
Query: 139 cccatttcaggggtaaatcttgtacccaatgaactgcacagctagaccttcatgcgaggg 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 cccatttcaggggtaaatcttgtacccaatgaactgcacagctagaccttcatgcgaggg 399
Query: 199 ctgctggaagccaccagaagatggtaaaagataggccatcttaaccatgagaaaatgata 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ctgctggaagccaccagaagatggtaaaagataggccatcttaaccatgagaaaatgata 459
Query: 259 tgtccagagagtaaagttcttaggaattacatttaaaaatggtatatcttaggtttctaa 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tgtccagagagtaaagttcttaggaattacatttaaaaatggtatatcttaggtttctaa 519
Query: 319 acagcgaatgattttttttttgttaatataatggttatacgttgcattgcttaacagaga 378
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 520 acagcgaatgatttttttt--gttaatataatggttatacgttgcattgcttaacagaga 577
Query: 379 catgaatactaatggttttaaaactaaaaattgatttccttcacataagaacctgaggac 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 catgaatactaatggttttaaaactaaaaattgatttccttcacataagaacctgaggac 637
Query: 439 aagccagctgacacatactgctagtcccagcactagggctgcaaagacaagaatactgca 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 aagccagctgacacatactgctagtcccagcactagggctgcaaagacaagaatactgca 697
Query: 499 aattcaagccaggctggaaagtagatgctggaccaggcttgctagaaaagctttgtctca 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 aattcaagccaggctggaaagtagatgctggaccaggcttgctagaaaagctttgtctca 757
Query: 559 aaaaaaaaaaaa--tggtaggcagtccatgagattatccaatgcccaatatcctgcctga 616
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 aaaaaaaaaaaaaatggtaggcagtccatgagattatccaatgcccaatatcctgcctga 817
Query: 617 attctttga 625
|||||||||
Sbjct: 818 attctttga 826
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1024
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1014
Effective search space: 623610
Effective search space used: 623610
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no460_a03.g1 MSMg01no460_a03.g1 CHROMAT_FILE:
MSMg01no460_a03.g1 PHD_FILE: MSMg01no460_a03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:08 2005
(602 letters)
>mm_chr4_13546608_13547609
Length = 1002
Score = 700 bits (362), Expect = 0.0
Identities = 368/370 (99%)
Strand = Plus / Minus
Query: 3 ctcagtagaatgagaacaatattgataatctactccaaagatctattttgagaaccagat 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ctcagtagaatgagaacaatattgataatctactccaaagatctattttgagaaccagat 311
Query: 63 gagacagagaaacatgtgtataaactatgaacattatttaaggagacaatcatatttatt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gagacagagaaacatgtgtataaactatgaacattatttaaggagacaatcatatttatt 251
Query: 123 attttccagtattacaggactggctctgctgccaagtaacttctttttctctccacctca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 attttccagtattacaggactggctctgctgccaagtaacttctttttctctccacctca 191
Query: 183 gcttttgagccaaggcttcttacagaacaaggaactccccattttagcaaacctaaatgg 242
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 gcttttgtgccaaggcttcttacagaacaaggaactccccattttagcaaacctaaatgg 131
Query: 243 ttcatggatggtgagtgttcacctgtctccgtcttcccagcataagaactacatgggttg 302
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 130 ttcatggatggtgagtgttcacctgtctccgtcttcccagcataggaactacatgggttg 71
Query: 303 cttctgtgtctggcttatttgggtgtaggagatttaattcagatcctcacacttgcatag 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 cttctgtgtctggcttatttgggtgtaggagatttaattcagatcctcacacttgcatag 11
Query: 363 caaacacttc 372
||||||||||
Sbjct: 10 caaacacttc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space: 587264
Effective search space used: 587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
