Query= MSMg01no460_c22.b1 MSMg01no460_c22.b1 CHROMAT_FILE:
MSMg01no460_c22.b1 PHD_FILE: MSMg01no460_c22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:21 2005
(593 letters)
>mm_chr4_90684523_90685516
Length = 994
Score = 1089 bits (563), Expect = 0.0
Identities = 584/591 (98%), Gaps = 1/591 (0%)
Strand = Plus / Minus
Query: 4 gaattctttcttctt-ccagtcttctcatctctcccctattaaatgtctcttgataggca 62
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 gaattctttcttcttatcagtcttctcatctctcccctattaaatgtctcttgataggca 735
Query: 63 aatgttaaactctcatgttatactaattcctctgggaattctacatgctagacatttgta 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 aatgttaaactctcatgttatactaattcctctgggaattctacatgctagacatttgta 675
Query: 123 aaaatatggaaaattgagttgttttacttatacatgactgttatataataaaattatgac 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 aaaatatggaaaattgagttgttttacttatacatgactgttatataataaaattatgac 615
Query: 183 tcactttagcttctgccttcacccaaagaaaataccaagagaatttatttgacaatcaat 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tcactttagcttctgccttcacccaaagaaaataccaagagaatttatttgacaatcaat 555
Query: 243 gtacttgtagatgctatattgcaatgttcttctcagaaatgttatccttttaaaatgaag 302
|||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 554 gtacttgtggatgctatattgaaacgttcttctcagaaatgttatccttttaaaatgaag 495
Query: 303 actataatactattggtgattgtaataaaaatgaactatagatgattgtggagcccacat 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 actataatactattggtgattgtaataaaaatgaactatagatgattgtggagcccacat 435
Query: 363 ttcctaaaatgacatcaccctgagtccacaaagctcatgatggcatccagaaatattttg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ttcctaaaatgacatcaccctgagtccacaaagctcatgatggcatccagaaatattttg 375
Query: 423 actctgtgcccttcactagtgtgaaggaacatcaggccacccctttataaagagggtgtc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 actctgtgcccttcactagtgtgaaggaacatcaggccacccctttataaagagggtgtc 315
Query: 483 actgggaggtctcatctcctttgattggtcatgaccttcctctgcatcaacctcatggtg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 314 actgggaggtctcatctcctttgattggtcatgaccttcctctgcatcaacctcagggtg 255
Query: 543 gcagtctatttctctcccaactcaagtggcttctacttggtatatgcttag 593
||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 254 gcagtctatttctctcccaactcaagtggcttctacttgttatatgcttag 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 994
Length adjustment: 10
Effective length of query: 583
Effective length of database: 984
Effective search space: 573672
Effective search space used: 573672
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no460_c22.g1 MSMg01no460_c22.g1 CHROMAT_FILE:
MSMg01no460_c22.g1 PHD_FILE: MSMg01no460_c22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:33:21 2005
(426 letters)
>mm_chr4_90517765_90518593
Length = 829
Score = 772 bits (399), Expect = 0.0
Identities = 425/445 (95%), Gaps = 19/445 (4%)
Strand = Plus / Plus
Query: 1 tctggccctcttattgtcaaacaacacattcaagaatcatggtcttttccaccttatttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 tctggccctcttattgtcaaacaacacattcaagaatcatggtcttttccaccttatttc 244
Query: 61 tgagcccagggttcactctaattttttaaactgtgatctgaaacttattaatttttcatt 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 245 tgagcccagggttcactctaattttttaaactgtgatctgtaacttattaatttttcatt 304
Query: 121 gggtctcttttatcaactagtttgtttgaactgaatgtatcaaattgtaagaactctctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gggtctcttttatcaactagtttgtttgaactgaatgtatcaaattgtaagaactctctt 364
Query: 181 taatccttcatctagatcataattctgaagaacatcaccctggcccacttctctctctct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 taatccttcatctagatcataattctgaagaacatcaccctggcccacttctctctctct 424
Query: 241 ctctctctctctctctctctctctct----------------ctctctctctctctctca 284
|||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 425 ctctctctctctctctctctctctctgtctctctctctctctctctctctctctctctca 484
Query: 285 cacacacacacacacacacacacacacacacacacacacaccctttactctggtttccca 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 cacacacacacacacacacacacacacacacacacacacaccctttactctggtttccca 544
Query: 345 gtacacttaaatttcttggaagctagtagggaaaaaaaaa---cagaaaactgaactaaa 401
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 545 gtacacttaaatttcttggaagctagtagggaaaaaaaaaaaacagaaaactgaactaaa 604
Query: 402 ggatgggaaatatggatttctgaac 426
|||||||||||||||||||||||||
Sbjct: 605 ggatgggaaatatggatttctgaac 629
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 125
Number of extensions: 44
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 829
Length adjustment: 9
Effective length of query: 417
Effective length of database: 820
Effective search space: 341940
Effective search space used: 341940
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
