BAC Information

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BAC

Clone NameMSMg01-460M12
Chromosome4 (Build37)
Map Location 69,937,620 - 69,937,797
singlet/doubletsinglet
Overlap geneCdk5rap2
Upstream geneLOC622491, LOC433716, LOC100039888, LOC242497, LOC671064
Downstream geneMegf9, LOC100039565
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460M12.T7 (MSMg01no460_m12.b1)MSMg01-460M12.TJ (MSMg01no460_m12.g1)
ACCAG546057AG546058
length754746
length of high quality
(start - end)
182 (67 - 248)106 (64 - 169)
definitionCHROMAT_FILE: MSMg01no460_m12.b1 PHD_FILE: MSMg01no460_m12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:08 2005CHROMAT_FILE: MSMg01no460_m12.g1 PHD_FILE: MSMg01no460_m12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAATTTGCGNCCGCTAAACAACTCACATTCCAAAGAGGATCCGCGGAAAT
CTTTTTTCCCCCTCTGCAGCTCTAGAACCTGGCCGTGGAGTTGAGCCACC
ACCACCTCTGGCGAAGCAGGAAGATTATATAAATTTTCCAATAACTCAGG
TGTCTTTAATTGGATCAACAAGCCCGTCTTCTCGGCATCCTGGAGACAGA
CAAGTATAGCACTGAATATGTTTAAAACACACTTTCTTTTGTTTATTGGN
CAACATATGGTTTAAAGTCANNNNNNNTTCAAAANNTGTTCACCCACCCC
TCCAGTTTTGATAATTAGAATCTAGNNNAAGCNNNNNNNAANNATTTTGG
AAAATTTCCCCCCTCCCTCCTGAAAAAAAATAACNNCAAAATACTTAATA
TACTTCTTNNNNNNNNNNNCTTGGGATCTTTGGNNCCCTGGATTTTCTGG
GGGGAGGCCCAAAAATTAAAAAGTTTTNNNNNNNNNNNTTTTTTATAACA
AAAGGGGTTGGGNNATGGGCCTTAAACCCTTTCCGCGTTGGGTCACCCAT
TCCTAAGGGAAACCCCCCCCGGGCCCAAAAATTTTTGGTTGGGCCCCCTC
CTTTAAAAGGGTTACTGAAATGGAGTTTTATATAAAGGGCATTTTTTACG
GCGGGCGGGGTTTAAANGGGGTNTTTTTNACAANAAAAAATATTCTTAAA
CGGTACCACCCCTTGAACCCTTTCCCCTTCCTTTTCTNTTGGGTGGGTGG
TGTT
CAATGGGTACCCTGGCGCCGCCTGTCCTCAACTTTANGTGACCTATATTT
TCTCCGCGGATTCAGTGAAATCATTAGGACAACAGAAGTTGTGACCTAAT
CCATACACAAATAAATAAATGAATAAATAAATAAATACCTTTANACTGTT
GGTACTTTTGACAGCAAATGTTTAGAAACTTAAAAGTTTGNTGTCTGTGT
TTAAAATGGAAAAGGAAAAAGTATTGCTTTCTCCTTAATCCTAAAGANNN
NTTATTNTCCACCCCACAAAAAAAATGGGAATTACCCTGGATANTTTTTT
TAAATACAGNCNNAAAATTAATAATACTANNNNATTGTTTGGGTTTAAAA
ATACTAGTGCGGGGGGGGGGTGGGGGGGGGGGGGGCGTNNTATTTCACAA
ANNNNAAGATTCCCCCTCTTTAAAAGACCCCCAAATTCTAAAATCATCTT
TTCCCCCAAAAAAAAAAATATTCCCCCCCTTTTTTTTTCTGAANNNNNNN
TTTTTTTTCTTTATANNNCTCCCCCCCCCACCATTTGGGTTTTTTTTANA
NNCAAAATTTTGTGTTTTGTTCTNNNNNNTATCAAACNNNCTTTAAAAAA
ATCTTCCCATAATTTCTCTTCCTATTCCCCTCCTACAAACTCCTCTTTTT
TTTTTTTTATTTTTTTTCCCCCTTTACAATAATTACTCTCATTCGTTTTG
TTTTGNNNNNNNNNNNNNNNNNNNNNNTTNTTNCTNGTNGGGTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_m12.b1 MSMg01no460_m12.b1 CHROMAT_FILE:
MSMg01no460_m12.b1 PHD_FILE: MSMg01no460_m12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:08 2005
         (182 letters)



>mm_chr4_69937420_69938001
          Length = 582

 Score =  321 bits (166), Expect = 1e-92
 Identities = 175/178 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagctctagaacctggccgtggagttgagccaccaccacctctggcgaagcaggaagatt 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagctctagaacctggccttggagttgagccaccaccacctctggcgaagcaggaagatt 260

                                                                       
Query: 61  atataaattttccaataactcaggtgtctttaattggatcaacaagcccgtcttctcggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atataaattttccaataactcaggtgtctttaattggatcaacaagcccgtcttctcggc 320

                                                                     
Query: 121 atcctggagacagacaagtatagcactgaatatgtttaaaacacactttcttttgttt 178
           ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 321 atcctggagacagacaagtatagcactgagtatgcttaaaacacactttcttttgttt 378


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 582
Length adjustment: 8
Effective length of query: 174
Effective length of database: 574
Effective search space:    99876
Effective search space used:    99876
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)