BAC Information

Click to search

BAC

Clone NameMSMg01-461D14
Chromosome4 (Build37)
Map Location 35,093,053 - 35,093,536
singlet/doubletsinglet
Overlap geneMobkl2b
Upstream geneSpaca1, LOC100039220, LOC665361, LOC665367, 2700059D21Rik, Orc3l, Rars2, Slc35a1, 1700003M02Rik, Gm136, 1810030N24Rik, Zfp292, Cga
Downstream geneIfnk, 3110043O21Rik, LOC620559, LOC621227, Lingo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-461D14.T7 (MSMg01no461_d14.b1)MSMg01-461D14.TJ (MSMg01no461_d14.g1)
ACCAG546397AG546398
length738737
length of high quality
(start - end)
513 (71 - 583)485 (73 - 557)
definitionCHROMAT_FILE: MSMg01no461_d14.b1 PHD_FILE: MSMg01no461_d14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:44 2005CHROMAT_FILE: MSMg01no461_d14.g1 PHD_FILE: MSMg01no461_d14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACACGCGCGGAA
TCTGGTTAGTTCCTACAACATTTTTAATGGACTCTTCATTGCTTCCCTCC
CTCCCGTTACCCCCTCCCACAGTCCTTACCCACATTCCCCTTCTCCTCTG
AATGGATCAGAGCCCCCTGGATATCCCTCACCCTGGCACATCAAATCTCT
TTGGGGTTAGGCACATCCACACGCACTAGCCCAGATAGAACAACATATCC
TATACACAGGCAACAGCTTTTGGGATAAGCCCTGTTCCAGTTGTTTGGGA
CCTACATGAATTATCTTGTTGCACATCTGCTACATATGTGTGAGGAGACC
TAGGCCCAGTCAGTGTACTCTCTTTGGTTAGTGGGTCAGTCTCTGAGAGC
CCCAAGGGTCCAGGTTACTTGACTGTTGGTCTGCCTGTGGAGTTTCTATC
CCCTTCAGGGTCTGCAATCCTTTCTCCTATTCTTCCACAAGAATCCCCAA
GCTCCATCCACTGTTTGGATGTGGGTGTCTGCATCTGTCTGAGTCAGCTG
CTGGGTGGAGCCTCTCAGAGGACAGCCATGCCAGACTCCTGTCTGCAAGC
ATAACCTCTAATAGTGTCAGGGACTGGTGCTTACCCATGTTATGTGTCTC
AAGTTAAGCGAGCTTCGGATTGGCTAATCCCTCAGCCTCTGTTCCATCCC
TATCCCCGGATTTTCTTGTAGCCAGGATACATTTTGTG
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATGCATAAGTGAATACACATGCACCCTT
GATAAAGACTGTTGGCTTGGGGATTGTCACAATAGCTTCGATCTACTTCT
TTACTCTCCTGTTGTCTTCTCGGGGACATTTTGCCCTGGGGTAGCAGTAA
GACCTTCAGAGAATAGTGGTGGAATCTGTCACCTACCAGGACAATCTTTC
CCTCTCCACTGTGGATCCCGGTGGCTGAGGTAGTGCATCCAAGTGTGCCA
GTGGTTGAGGGGATTTTCTTTCGGTGGAGTGAGTAACGGATGACACAGGA
TGATTCTTGGTCCATAGACGAGGCACTGTGCTCTGTTAATCACTACTGGC
TTGCTTGTGGTCACGTTTCTTGCCGTTAATGAAGAGCAAACAGGCGTTGC
AGAAAACCTCGAGGGAGCTTTCTGCAGATCAGCAAAGGCCTGACTCATCC
GATGCAAATCATGGAACTCCTCCTTATTTTCATAGCCGAGAAGCTGGAAG
TAGTGTCAGGTGATAGTTTGGTCCCAGCAAGATTGATGAACGGGCGCTTT
TCTTCCTGCCTACTATGACCTGATTTTGCCTTGTACCACCTGTTTCTCTT
ATTCCTGGAATATCTCCCCGGATGGTCCTATCTAGACATACATCTTTGTT
ATTCTGTTTCTTAAGCATTTGCCGGTCTTATTCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no461_d14.g1 MSMg01no461_d14.g1 CHROMAT_FILE:
MSMg01no461_d14.g1 PHD_FILE: MSMg01no461_d14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:44 2005
         (485 letters)



>mm_chr4_35092852_35093736
          Length = 885

 Score =  797 bits (412), Expect = 0.0
 Identities = 465/492 (94%), Gaps = 16/492 (3%)
 Strand = Plus / Minus

                                                                       
Query: 2   tgcataagtgaatacacatgcacccttgataaagactgttggcttggggattgtcacaat 61
           ||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 685 tgcataactaaatacacatgcacccttgataaagactgatggcttggggattgtcacaat 626

                                                                       
Query: 62  agcttcgatctacttctttactctcctgttgtcttctcggggacattttgccctggggta 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 625 agcttcgatctacttctttactctcctgttgtcttctcggggacattttgcccgggggta 566

                                                                       
Query: 122 gcagtaagaccttcagagaatagtggtggaatctgtcacctaccaggacaatctttccct 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcagtaagaccttcagagaatagtggtggaatctgtcacctaccaggacaatctttccct 506

                                                                       
Query: 182 ctccactgtggatcccggtggctgaggtagtgcatccaagtgtgccagtggttgagggg- 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 505 ctccactgtggatcccggtggctgaggtagtgcatccaagtgtgccagtggttgagggga 446

                                                                       
Query: 241 -------attttctttcggtggagtgagtaacggatgacacaggatgattcttggtccat 293
                  |        ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 445 accaccaa--------cggtggagtgagtaaaggatgacacaggatgattcttggtccat 394

                                                                       
Query: 294 agacgaggcactgtgctctgttaatcactactggcttgcttgtggtcacgtttcttgccg 353
           | ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 393 aaacgaggcactgtgctctcttaatcactgctggcttgcttgtggtcacgtttcttgccg 334

                                                                       
Query: 354 ttaatgaagagcaaacaggcgttgcagaaaacctcgagggagctttctgcagatcagcaa 413
           |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 333 ttaatgaagagcaaacaggcgttgtagaaaacctcgagggagctttctgtagatcagcaa 274

                                                                       
Query: 414 aggcctgactcatccgatgcaaatcatggaactcctccttattttcatagccgagaagct 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 273 aggcctgactcatccgatgcaaatcatggaactcctccttattttcatagccgcgaagct 214

                       
Query: 474 ggaagtagtgtc 485
           ||||||||||||
Sbjct: 213 ggaagtagtgtc 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space:   415625
Effective search space used:   415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)