Query= MSMg01no462_e04.b1 MSMg01no462_e04.b1 CHROMAT_FILE:
MSMg01no462_e04.b1 PHD_FILE: MSMg01no462_e04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:13 2005
(532 letters)
>mm_chr4_69758663_69759594
Length = 932
Score = 959 bits (496), Expect = 0.0
Identities = 519/532 (97%), Gaps = 9/532 (1%)
Strand = Plus / Plus
Query: 1 caaatctcttctgtagtaattatctcataactgggactagagcagatagcaggtcataaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaatctcttctgtagtaattatctcataactgggactagagcagatagcaggtcataaa 260
Query: 61 tacttttttcctctaatcttctgggttttcccagttctctgtttatggtctattctggat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacttttttcctctaatcttctgggttttcccagttctctgtttatggtctattctggat 320
Query: 121 ttcttctaagactagaaccaccggactgctagcctgctcaaatgaagaccaggaccccaa 180
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcttccaaaactagaaccaccggactgctagcctgctcaaatgaagaccaggaccccaa 380
Query: 181 cctaagctttcaagaagctgagtgtatactgtacacagcatcatttctgccacataacgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctaagctttcaagaagctgagtgtatactgtacacagcatcatttctgccacataacgt 440
Query: 241 caatataaacccatgacaataatcccagagttgcaggaagctctatatcttaaaggagga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caatataaacccatgacaataatcccagagttgcaggaagctctatatcttaaaggagga 500
Query: 301 atagactgattctagaacttagataatatgcaacaccagaaatagtattaaaaatcatct 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atagactgatt---------agataatatgcaacaccagaaatagtattaaaaatcatct 551
Query: 361 ttggaacatataataaggaacaatgagaaagaatatttccaaagagctgagaacctctgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ttggaacatataataaggaacaatgagaaagaatatttccaaagagctgagaacctctgt 611
Query: 421 gtagaagatgaaatgaaagaggtcatagagatggcacaggtaagaaggggcagtcttatc 480
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 612 gtagaagatgaaatgaaagaggtcatggagatggcacagggaagaaggggcagtcttatc 671
Query: 481 caccccctggtgatggataagaatattctgcaagagaagactgaaagcaatg 532
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 caccccctggtgatggataagaatattctgcaagagaagactgaaagcaatg 723
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space: 481284
Effective search space used: 481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no462_e04.g1 MSMg01no462_e04.g1 CHROMAT_FILE:
MSMg01no462_e04.g1 PHD_FILE: MSMg01no462_e04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:13 2005
(498 letters)
>mm_chr4_69936903_69937801
Length = 899
Score = 884 bits (457), Expect = 0.0
Identities = 487/497 (97%), Gaps = 3/497 (0%)
Strand = Plus / Minus
Query: 1 aaaacccgcaacaagcaactccatgagaagctaattctggcagaggcaatgatggagggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 aaaacccgcaacaagcaactccatgagaagctaattctggcagaggcaatgatggagggg 637
Query: 61 ctgccggtgcccaactctgcgctggtgaacggtaagcattaagaaaatgtgtctctgtga 120
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 636 ctgccggtgcccaactctgcgctggtgaatggtaagcatcaagaaaatgtgtctctgtga 577
Query: 121 gctgggtgagcagccgacggggctgcctaaatgctagtcctgttgttcagaattgcagaa 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 576 gctgggtgagcagccgacggggctgactaaatgctagtcctgttgttcagaattgcagaa 517
Query: 181 agtttgtatataaattctgtgaacggcagtgattaatcttaactcctgaaaaatgcacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 agtttgtatataaattctgtgaacggcagtgattaatcttaactcctgaaaaatgcacag 457
Query: 241 tggaagaatacaagaaagggaaacaaatcagttgatttcttttattctggaatctggact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tggaagaatacaagaaagggaaacaaatcagttgatttcttttattctggaatctggact 397
Query: 301 agtgtgtgggaattgtagtattctcaggtcctggaaggagggctctctgctgcattcctt 360
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 396 agtgtgtgggaattgtagtattctcaggtcctgggaggagggctctctgctgcattcctt 337
Query: 361 tgaaattgtgtatgggtgcctagggtagtgttgttattgttttgctgttttggacca-tt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 336 tgaaattgtgtatgggtgcctagggtagtgttgttattgttttgctgttttggaccattt 277
Query: 420 ttttcaaacttgttcttttttcatatattatatcccagagttt-cacacacacacacgag 478
||||||||||||||||| ||||||||||||||||||||||||| | || |||||||| ||
Sbjct: 276 ttttcaaacttgttcttctttcatatattatatcccagagtttcccca-acacacaccag 218
Query: 479 cccctccatatcccccc 495
|||||||||||||||||
Sbjct: 217 cccctccatatcccccc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 899
Length adjustment: 10
Effective length of query: 488
Effective length of database: 889
Effective search space: 433832
Effective search space used: 433832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
