BAC Information

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BAC

Clone NameMSMg01-462H05
Chromosome4 (Build37)
Map Location 49,933,658 - 49,934,141
singlet/doubletsinglet
Overlap genenone
Upstream geneE130309F12Rik, LOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2
Downstream geneLOC666663
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462H05.T7 (MSMg01no462_h05.b1)MSMg01-462H05.TJ (MSMg01no462_h05.g1)
ACCAG547334AG547335
length787861
length of high quality
(start - end)
484 (74 - 557)208 (76 - 283)
definitionCHROMAT_FILE: MSMg01no462_h05.b1 PHD_FILE: MSMg01no462_h05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:28 2005CHROMAT_FILE: MSMg01no462_h05.g1 PHD_FILE: MSMg01no462_h05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGA
ATTCTCTCATATTTGCCTCACCAGCACCTGTGTTAAAAGGGCACAACACC
ATAACCAGGTTTTAGCCAGTACTGGGAATCAATTTCAACTCCTTGTGTTT
GAGCAGCAAGCCCTGTCTTGACTAAGCCATATCCTCAGCCCCAAAGGATG
TCTTCTTAATGAGTATTAGATAACACACATGTTTAATTGACAATGCTAGC
AAAATTGGAAACTTGTGGGGCAAACTTAGAAAAGTAAAAATATTTGTAGC
AAAGAGTTTGTCTTGTGCCCTCTCTTGGCAATGAGGAACATGGCTATCTT
CATGACTGTATCATTTTATCTCCATTTCAGTGACAAATGGTAAATAAATT
ATCTGTGACAGGATGTTAACTGGTAAACAGGCAAACAGTACTGAAAATGC
AGACTCTACAAGATGGATTTATGAAACAGGACTGATGTGGCTCCTAAAAT
TTCTGTATCCAGTAAGTATTTATTATTCATTTACTCTGTGCAAGATGTTA
TTTAGTTAGTAAAGATGCAGAGAGAATCATGAGCCATTTTCAACCCTTTT
TTGACCCAACCCTTCCCTCTAAGAACTTCCATGCACTTCACACATCTACA
TGTCTGAGATTTCTTATAATCACCCTTTTCTACTTGGCCTTGGTGGATTT
AATAAAAACCTTTGTAATCCTTACTTCCTTCTCTATATGGTTGGGGGTTT
TTTTTTTTTTGGAAGAAACACTTTTATCTCATAACCG
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCAACTAACCTAGACCCTTGAGATA
TCTCAGACACTGAGCCACCAGCCAGCATACGCCAGCTGATACGAGGCCCC
TGACACATCTGCAGCAGAGGACTGCCTGGTCTGGCCTCAGTGAGAGAAGA
TTCACCTATTCCTCAAGAGATTTGAGACCCCAGAAAGTGGGGAGGCCTGG
TAGGATGGTGGTGGAGGGTGGNTACATCCTTTTGTATATGTTTTGTTTNT
TTTTTTTTTTNTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
CNTTTTTTTTTTTTTTTNCTCCTTTTTTCTCTTTTCTCTTTCTTCTTTCT
TTCTTCCCCTTCCCCCTCTTCTTCCCCCCCTCTTCTTTTCTCTCTCCTTT
CTCTCTCTTTTCCCCTTCTCTTTCTTCTCCTTTCTCTTTCTCTTCCTTTT
TTCTTTTTTCCTTCCTCTTTTTTTCTCTTTTCTCCCTCTTTTTTTTCTCT
TCTTCTTTTCCTTTTCTTTTTTCTCTTTTTTCCTTCTTTCTTTCCCCTCT
TTCCCTTTTCTCTTTTTTTTCNCCTTCTTTTCCCCTTCTTTTTTTTCTCT
TTTTCCTCTTCCTCATCTATCCCTCTTCTTCCCTCCCTCCTTTCACTCTC
TTTCTCCTCACTACTTTTATTTTTTTTTCTTTTTATCTTTTTACCTCACT
TATTTCTCTCCTCTTTACTCTTTTTCTTCTCTCATCCTACTCTCTTTATT
AATTTCTCTTATTATTCTTTATCCTCCTCTATCTTCACTTCTCCCACTTC
TTTCTCTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_h05.b1 MSMg01no462_h05.b1 CHROMAT_FILE:
MSMg01no462_h05.b1 PHD_FILE: MSMg01no462_h05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:28 2005
         (484 letters)



>mm_chr4_49933458_49934341
          Length = 884

 Score =  920 bits (476), Expect = 0.0
 Identities = 482/484 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcacctgtgttaaaagggcacaacaccataaccaggttttagccagtactgggaatcaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gcacctgtgttaaaagggcacaacaccataaccaggttttagccagtactgggaatcaat 625

                                                                       
Query: 61  ttcaactccttgtgtttgagcagcaagccctgtcttgactaagccatatcctcagcccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttcaactccttgtgtttgagcagcaagccctgtcttgactaagccatatcctcagcccca 565

                                                                       
Query: 121 aaggatgtcttcttaatgagtattagataacacacatgtttaattgacaatgctagcaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaggatgtcttcttaatgagtattagataacacacatgtttaattgacaatgctagcaaa 505

                                                                       
Query: 181 attggaaacttgtggggcaaacttagaaaagtaaaaatatttgtagcaaagagtttgtct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 504 attggaaacttgtggggcaaacttagaaaagtaaaaatatttgtagcaaagagttggtct 445

                                                                       
Query: 241 tgtgccctctcttggcaatgaggaacatggctatcttcatgactgtatcattttatctcc 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgtgccctcacttggcaatgaggaacatggctatcttcatgactgtatcattttatctcc 385

                                                                       
Query: 301 atttcagtgacaaatggtaaataaattatctgtgacaggatgttaactggtaaacaggca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atttcagtgacaaatggtaaataaattatctgtgacaggatgttaactggtaaacaggca 325

                                                                       
Query: 361 aacagtactgaaaatgcagactctacaagatggatttatgaaacaggactgatgtggctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aacagtactgaaaatgcagactctacaagatggatttatgaaacaggactgatgtggctc 265

                                                                       
Query: 421 ctaaaatttctgtatccagtaagtatttattattcatttactctgtgcaagatgttattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctaaaatttctgtatccagtaagtatttattattcatttactctgtgcaagatgttattt 205

               
Query: 481 agtt 484
           ||||
Sbjct: 204 agtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)