BAC Information

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BAC

Clone NameMSMg01-462K12
Chromosome4 (Build37)
Map Location 55,617,784 - 55,803,297
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041303, LOC384018, EG666920, Zfp462, LOC670211, Rad23b, LOC666953, LOC100041348, Klf4
Downstream geneActl7b, Actl7a, Ikbkap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462K12.T7 (MSMg01no462_k12.b1)MSMg01-462K12.TJ (MSMg01no462_k12.g1)
ACCAG547492AG547493
length844761
length of high quality
(start - end)
171 (80 - 250)238 (78 - 315)
definitionCHROMAT_FILE: MSMg01no462_k12.b1 PHD_FILE: MSMg01no462_k12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:44 2005CHROMAT_FILE: MSMg01no462_k12.g1 PHD_FILE: MSMg01no462_k12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,803,130 - 55,803,297)(55,617,784 - 55,618,020)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCTTACCCCGCGG
AATTCCCGGATGTTTCAGATACTCTGGCCTGGTCCTCCTAATGGTCAGAT
TAACCTAAACCCATCAGAATGCTACACACACTTAGCCCACTCAGCAAAGG
CTTCAGGTTACAACAGAGGAAGGCAGAGAAAACATGAATACCAAGGAGAG
GGGGAGACAGAACGCAAACAGAAAAGGAGAGGAAGAAGGGAAGCAAAGGA
GATTTTTGAGAAAGACAGAAATCCAGAGGAAGAGAGGAGAGGTTTGTAGA
GGGGAAGGCAAGGGAAGTACTGCTAATGTAGGGGAGGCGAGCGNCCGCGG
GGGGCGGGGTTTTTTTTTCTCCCCCCCCCTCGTTGGGGTGGACGGCGGCC
CCTGGCTCTGCGCGATTGTGCTTGCCGCCCTCTTTTTTTTTTCTTTTTTT
CCCCTCTCTTCATTCCATTCCCCTCCCTTTTTTCTGATCGTTTTTATTCG
CTCCTTCTTTCTCCCTCCTTACTTCCTCCTCGCCCTTCTCTTTCTTTCTC
CCCGTTTCTCCCCCTTTACTTCCTTTCATCTTCCTTCTCTCTCTACTTCT
TACCATTCTTCTCTTTCTTTCTCTTTCTCTTCCGTTCTATTTTGTATTTC
TCCACCCTTCTTCTTCGCTCTTCCCCTCCCCCCCCTGACAAGCGGATTAC
CCAACTTTTTACTTTTTTTTCCTTTCGCTCCCNCATACTTTTCGTCCGTT
CACCCCTGCCTCTCCTTCTCCCCGCACCAAACCTTCGTGTACCACCATAC
CTCTCGACCCCTTTCACTATAACTAGTCTTTTTTCTGTCTATCG
CGATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTTAACATACCATGCAGCACAACTCCC
TTCTGCGAGAAGCCCCAGTACTCTCTGCCAACAACCTGCTGTCTTTCCCT
TTAGGCTGGTGGCCGCGCCCCTTCCTTACGCAGCTCATTTTCCATTTTAA
GATTTCCTGTTTGAACTAAAGGGCAAAGATCTAGATGTATCAGACTGGAG
TCAAGCTTCTGTGTGTATAAAGGGGAGCTCTGGCCCCTGCCCTCTGTTTG
TCCACTGGCTTATCTTATTCATTCCAAGTCCCAAGTTCAGAGGCTCCAGT
TCCTTCCCGATTTGCTGGGTAAAGTCCAGCCCTTCCGTGCGGGCGGCCAG
GGCGGGTGGCCAGCCTGGAGCCAGTGGTCATTTATGGCTGGACAGGGCTT
CCGTCCTGCCTGGTAATCCATTGGCTACAGCTAACAGACAGCTGGACAAC
TGAAGGACAGGTGTACTAAGGACACCCCATTTTTTTTCTTTTTTTTTTTT
CTTTTTCAGCTTAGTGCTAAGCCGGTGAATGATACCAACAAGGCCAGTGT
CTGCTGAGGTCTGCTTGAAACTACTGGTCTTTCATGGCCCATCAGGCTTT
TCTTGTTCCACCGTGGCACCCCCCGCTAATACTAAGAACTCCCTTGTCCT
TGGTCTTTTTCTATACTAAATCTTTAATTTGGCGTCCTTTTTTCATCGAG
TGTAAAATAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_k12.b1 MSMg01no462_k12.b1 CHROMAT_FILE:
MSMg01no462_k12.b1 PHD_FILE: MSMg01no462_k12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:44 2005
         (171 letters)



>mm_chr4_55802927_55803497
          Length = 571

 Score =  310 bits (160), Expect = 4e-89
 Identities = 166/168 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   tcctcctaatggtcagattaacctaaacccatcagaatgctacacacacttagcccactc 63
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 371 tcctcctaatggtcagattaacctaaacccatcagaatgctaaacacacttagcccactc 312

                                                                       
Query: 64  agcaaaggcttcaggttacaacagaggaaggcagagaaaacatgaataccaaggagaggg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 311 agcaaaggcttcaggttacaacagaggaaggcagagaaaacatgaataccaaggaaaggg 252

                                                           
Query: 124 ggagacagaacgcaaacagaaaaggagaggaagaagggaagcaaagga 171
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ggagacagaacgcaaacagaaaaggagaggaagaagggaagcaaagga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 171
Length of database: 571
Length adjustment: 8
Effective length of query: 163
Effective length of database: 563
Effective search space:    91769
Effective search space used:    91769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no462_k12.g1 MSMg01no462_k12.g1 CHROMAT_FILE:
MSMg01no462_k12.g1 PHD_FILE: MSMg01no462_k12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:44 2005
         (238 letters)



>mm_chr4_55617584_55618221
          Length = 638

 Score =  451 bits (233), Expect = e-131
 Identities = 236/237 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acataccatgcagcacaactcccttctgcgagaagccccagtactctctgccaacaacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acataccatgcagcacaactcccttctgcgagaagccccagtactctctgccaacaacct 260

                                                                       
Query: 61  gctgtctttccctttaggctggtggccgcgccccttccttacgcagctcattttccattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgtctttccctttaggctggtggccgcgccccttccttacgcagctcattttccattt 320

                                                                       
Query: 121 taagatttcctgtttgaactaaagggcaaagatctagatgtatcagactggagtcaagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 taagatttcctgtttgaactaaagggcaaagatctagatgtatcagactggagccaagct 380

                                                                    
Query: 181 tctgtgtgtataaaggggagctctggcccctgccctctgtttgtccactggcttatc 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgtgtgtataaaggggagctctggcccctgccctctgtttgtccactggcttatc 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)