Query= MSMg01no463_b22.b1 MSMg01no463_b22.b1 CHROMAT_FILE:
MSMg01no463_b22.b1 PHD_FILE: MSMg01no463_b22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:23 2005
(543 letters)
>mm_chr4_34379697_34380640
Length = 944
Score = 980 bits (507), Expect = 0.0
Identities = 536/547 (97%), Gaps = 4/547 (0%)
Strand = Plus / Plus
Query: 1 tgatcaagggaaggctgggagaacatgtttataggcaaaggagccctgcacagacagcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgatcaagggaaggctgggagaacatgtttataggcaaaggagccctgcacagacagcag 260
Query: 61 atatttacaaatacagatggaaaggaacttgagaaggggctcaaatacatcactctgtct 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 atatttacaaatacagatggaaaggaacttgagaaggggctcaaatacatcagtctgtct 320
Query: 121 ttagccaccatagagtcagaatcg-aaaaaatcccaccccctcgattgcaagc---tggt 176
|||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||
Sbjct: 321 ttagccaccatagagtcagaatcgaaaaaaatcctaccccctcgattgcaagctggtggt 380
Query: 177 acaaccactctggaaatcagtctggcggttcctcagaccattggacaaagtactaccgga 236
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 acaactactctggaaatcagtctggcagttcctcagaccattggacaaagtactaccgga 440
Query: 237 agatccagcaatacctctcctgggcatatatccaaaagatgttccaacttgtactaagga 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agatccagcaatacctctcctgggcatatatccaaaagatgttccaacttgtactaagga 500
Query: 297 cacacgctccactatgttcatagcagccttgtttataatagccagaagctggaaagaacc 356
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacatgctccactatgttcatagcagccttgtttataatagccagaagctggaaagaacc 560
Query: 357 cagatgtccctcagcagaggaatggatacagaaaatgtggtacatttacacaatggagta 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagatgtccctcagcagaggaatggatacagaaaatgtggtacatttacacaatggagta 620
Query: 417 ctaatcaggtattaaaaacaatgaatttaagaaattcgtaggcaaatggatagatctgga 476
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctactcagctattaaaaacaatgaatttaagaaattcgtaggcaaatggatagatctgga 680
Query: 477 ggatatcatcctgagtgaggtaacccaatcacaaaagaacacacatgatacactcactga 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggatatcatcctgagtgaggtaacccaatcacaaaagaacacacatgatacactcactga 740
Query: 537 ttaagtg 543
|||||||
Sbjct: 741 ttaagtg 747
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 944
Length adjustment: 10
Effective length of query: 533
Effective length of database: 934
Effective search space: 497822
Effective search space used: 497822
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no463_b22.g1 MSMg01no463_b22.g1 CHROMAT_FILE:
MSMg01no463_b22.g1 PHD_FILE: MSMg01no463_b22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:23 2005
(481 letters)
>mm_chr4_34596881_34597761
Length = 881
Score = 830 bits (429), Expect = 0.0
Identities = 436/439 (99%), Gaps = 3/439 (0%)
Strand = Plus / Minus
Query: 44 gtttttgtaatttttttc-acatatttttctttttttctgtgtgtgtgggcacatatgtg 102
|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 881 gtttttgtaatttttttcaacatatttttctttttttc--tgtgtgtgggcacatatgtg 824
Query: 103 agcgggcattgtgccaggactcacatggagaagtgtgtagtgcactctctctgtcattac 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 agcgggcattgtgccaggactcacatggagaagtgtgtagtgcactctctctgtcattac 764
Query: 163 ctgggttttaggaattgaactggcatcatcaggcatccaaagcaagcaagcacctgaccc 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 ctgggttttaggaattgaactggcatcatcaggcatccaaagcaagcaagcacctgaccc 704
Query: 223 actgcgccatctcccctgctccggtttcctatttctctctctctctagtttcatgaggta 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 actgcgccatctcccctgctccggtttcctatttctctctctctctagtttcatgaggta 644
Query: 283 ggttttgcattgtgattacttacgacataaatcattgtgtcaaaattgtacttgtccatg 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 ggttttgcattgtgattacttacgacataaatcattgtgtcaaaattgtacttgtccatg 584
Query: 343 cgatgtatagcagctgcaaggtccctggggagaagagggagggttataattacttttact 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 cgatgtatagcagctgcaaggtccctggggagaagagggagggttataattacttttact 524
Query: 403 tacttggtaacagtaactaaaatctgtataattctgcagcctagagcatgtaaattatcc 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 tacttggtaacagtaactaaaatctgtataattctgcagcctagagcatgtaaattatcc 464
Query: 463 ttgtagccagtatgctttg 481
|||||||||||||||||||
Sbjct: 463 ttgtagccagtatgctttg 445
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space: 410241
Effective search space used: 410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
