Query= MSMg01no463_b24.b1 MSMg01no463_b24.b1 CHROMAT_FILE:
MSMg01no463_b24.b1 PHD_FILE: MSMg01no463_b24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:24 2005
(590 letters)
>mm_chr4_48149155_48150144
Length = 990
Score = 1058 bits (547), Expect = 0.0
Identities = 579/590 (98%)
Strand = Plus / Plus
Query: 1 ttcactgtattaagggataatgccattgaggcagtagtcacttctcccgcctttttgaga 60
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 201 ttcactgtattaagggataatgccattgaggcagtaatcacttctccagcctttttgaga 260
Query: 61 tgtgggtaaataatgacagcagaagcaaaggccgctgcttttctttgctgagaattatct 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 tgtgggtaaataatgacagcagaagcaaaggccgctgcttttctttgctgagaattatgt 320
Query: 121 tacaggtttctgtgtgttataacatttcatttttcaatagatttataggtcaaatattat 180
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacaggtttccgtatgttataacatttcatttttcaatagatttataggtcaaatattat 380
Query: 181 tgatgctttgtcttctagttttttatgtttatttattattaatgtgatgtacggggacac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgatgctttgtcttctagttttttatgtttatttattattaatgtgatgtacggggacac 440
Query: 241 acatgctttattgtagatgtggagatcagagaacaacctttggagtcctttctcttcctt 300
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acatgccatagtgtagatgtggagatcagagaacaacctttggagtcctttctcttcctt 500
Query: 301 ctgtgtggctcctggggattaaactcagttcttgggcttagggccaagccattacctgct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgtgtggctcctggggattaaactcagttcttgggcttagggccaagccattacctgct 560
Query: 361 gaaccatttcaccagcctaagttttgctttttgagacaaggtttcactatgtaagcccca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaccatttcaccagcctaagttttgctttttgagacaaggtttcactatgtaagcccca 620
Query: 421 gctggccttgacccctggacctcccttttctagctccccagtgctgtgactccaggcctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctggccttgacccctggacctcccttttctagctccccagtgctgtgactccaggcctg 680
Query: 481 cgttgtcactctgtactgtgtgttacgttgtangtggagagacattgagagcagatcagc 540
||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 681 cgttgtcacactgcactgtgtgttacgttgtaggtggagagacattgagagcagatcagc 740
Query: 541 tgcatatgtggaggttgctatgttagtacatatgtctaatgtatacgttc 590
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgcatatgtggaggttgctatgttagtacatatgtctaatgtatacgttc 790
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space: 568400
Effective search space used: 568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no463_b24.g1 MSMg01no463_b24.g1 CHROMAT_FILE:
MSMg01no463_b24.g1 PHD_FILE: MSMg01no463_b24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:24 2005
(534 letters)
>mm_chr4_48324367_48325300
Length = 934
Score = 739 bits (382), Expect = 0.0
Identities = 413/436 (94%), Gaps = 20/436 (4%)
Strand = Plus / Minus
Query: 99 cagctttttttcaaggattctatgaatcaaactcaggtcctcaggcttgtgtaccaggta 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934 cagctttttttcaaggattctatgaatcaaactcaggtcctcaggcttgtgtaccaggta 875
Query: 159 cgtactgtacttaactgtctctccagcccaaatagcatatttctaagatcacagatttaa 218
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 874 cgtactgtacttaactgtctttccagcccaaatagcatatttctaagatcacagatttaa 815
Query: 219 gtgggataaacaacatttgaaaagaagtttgctaaatgaaaggaaaggaaaggaaaggaa 278
||||||||||||||||||||||||||||||||||||| |||
Sbjct: 814 gtgggataaacaacatttgaaaagaagtttgctaaat--------------------gaa 775
Query: 279 aggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaagtttaatggggattatacta 338
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 atgaaaggaaaggaaaggaaaggaaaggaaaggaaaggaagtttaatggggattatacta 715
Query: 339 aaagccccaatctatagcagacatgcacaacttactttttctcctctcccaagttgcata 398
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 714 aaagccccaatctatagcagacatgcacgacttactttttctcctctcccaagttgcata 655
Query: 399 atcatggctacttagaagatgtcttgcaactatgtgttcagtcaggatttccacagtgta 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 atcatggctacttagaagatgtcttgcaactatgtgttcagtcaggatttccacagtgta 595
Query: 459 gctattagattcaattccactccattggcttgactataatacctcaccgggcatctacac 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gctattagattcaattccactccattggcttgactataatacctcaccgggcatctacac 535
Query: 519 tttattcctctttcaa 534
||||||||||||||||
Sbjct: 534 tttattcctctttcaa 519
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 11
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space: 484176
Effective search space used: 484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
