BAC Information

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BAC

Clone NameMSMg01-463E10
Chromosome4 (Build37)
Map Location 132,336,610 - 132,337,013
singlet/doubletsinglet
Overlap genenone
Upstream genePtpru, Mecr, Sfrs4, EG664865, EG623230, Epb4.1, LOC666480, LOC100039835, Oprd1, LOC664894, Ythdf2, LOC664903, Gmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2
Downstream geneBC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463E10.T7 (MSMg01no463_e10.b1)MSMg01-463E10.TJ (MSMg01no463_e10.g1)
ACCAG547966AG547967
length780764
length of high quality
(start - end)
241 (77 - 317)421 (76 - 496)
definitionCHROMAT_FILE: MSMg01no463_e10.b1 PHD_FILE: MSMg01no463_e10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:37 2005CHROMAT_FILE: MSMg01no463_e10.g1 PHD_FILE: MSMg01no463_e10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCACCTATACTTTGCGGCGCTAATACGATCACTATTTCTACACAACCG
CGGAATTCCAGGAATTCCGAACTACACAGAGAAACCCTGTCTTGAAAAAC
AAAACCGGGGCTGGAAAGATGGCTCAGTGGTTAAGAGCACCAACTGCTCT
TCCGAAGGTCTTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACC
ATCTGTAACAAGTTCTGACACCTTCTTCTGGAGTGTCTGAAGACAACTAC
AGTGTACTTAAATAAATAAATCTTTACCAAAAAGAAAAAAAGAAAAACCA
AAACCAAAAGAAAGAAAGATTTGTATTTTAGAAAGAAAGAAAGAAAGAAA
GAAAGAAAGAAAGAATAGAAAGAAAGAAAGAAGTCAATATTCATAAGCCC
TATCAAGAGCCGTATCAAGGCTGAAATCAGGATTATGGATATCACAGCTA
AGGGCTAACCCTGGATCACTAAGCTGCCCACTTCAGTATCTGCCCCTGTT
CTATATCTGCCCCTATGCATTAATCTCTCTCTTCCAATATCTGCCCCTAT
TGAAATAATCTCTCCTCTTTCTCCCTTTTCCCTTTTTATTATTCCTTCCC
CTTTCCTTTCCCATAAATCTGGAATTTGGTTCACCCTTTGTACTTCCCTT
ATCTTCCTATCACTCTTTTCCTTCTATGGTTGTACTTTTATCCTCTCCGG
CGATTAACTCTTCACCTTTGGAACTTTGGTGCATTTTTCTCGTCCAACAG
AAGATAATAATTTTCACTCATCCTTTCCCC
NTACACGATGATGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTGTCTCGCGCAATTCCATTCCAAGGTAGAAAGGTCAGG
GGACCTGCAAGGACAGGGGACCTGCAAGGACAGGTCCAGGCAGCCCAGAG
AGGAGCAGACACAGGAGCACACACAGGTACAGTGTCTAGAATCTGACTCA
AATTGGACCCAGTCTCAAAACAGCTGTAAGCTGGTGGCCTACAGCTAAAT
TCTGTGGCTTCCTTAGCTTGCAGTTCTCTCATTTCCCAGGATGTGATGGA
TAGTTTCACACAACACGCCTATTTTTTTCTTGGAAATTGCATGGACAAAG
NTTGTATTTGTCCTCTTGTCTCCAGCTCTGAGCATGGTTTAAGACTCACC
GTTAAGAGCCCAGGGAACCAGCCGGACGTGGTGGCGCACGACTTTAATCC
CAGAACTAGGGAGGCAGAGGCAGGTGCATTTCTGAGTTCGAGGCCAGCCT
GGTCTACAGAGTGAGTTCCAGGACAGCCTGGGCTATACAGATAAACCCTA
TCTCGGAAAATAAAAAATAAATAGTCCAGGGAACCCTGACATGGTTTGTT
TTTTTAACACAGTTGACTTCCTCGGAAGAGAAGACACGGTTTTGGAACAC
CCGATCACTGGCATTGTGTCACTTGCTTTTGTTGACCACTGGTTCACACG
GCGAATACAGGAGTGTTACTTCCAACGCTTTCACGTTACTCATTATTGCT
CTTGGAACATACAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_e10.g1 MSMg01no463_e10.g1 CHROMAT_FILE:
MSMg01no463_e10.g1 PHD_FILE: MSMg01no463_e10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:37 2005
         (421 letters)



>mm_chr4_132336393_132337213
          Length = 821

 Score =  675 bits (349), Expect = 0.0
 Identities = 394/428 (92%), Gaps = 31/428 (7%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccattccaaggtagaaaggtcaggggacctgcaaggacaggggacctgcaaggacaggt 60
           |||||||||||||||||||||                 ||||||||||||||||||||||
Sbjct: 218 tccattccaaggtagaaaggt-----------------caggggacctgcaaggacaggt 260

                                                                       
Query: 61  ccaggcagcccagagaggagcagacacaggagcacacacaggtacagtgtctagaatctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaggcagcccagagaggagcagacacaggagcacacacaggtacagtgtctagaatctg 320

                                                                       
Query: 121 actcaaattggacccagtctcaaaacagctgtaagctggtggcctacagctaaattctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actcaaattggacccagtctcaaaacagctgtaagctggtggcctacagctaaattctgt 380

                                                                       
Query: 181 ggcttccttagcttgcagttctctcatttcccaggatgtgatggatagtttcacacaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcttccttagcttgcagttctctcatttcccaggatgtgatggatagtttcacacaaca 440

                                                                       
Query: 241 cgcctattttttt-------cttggaaattgcatggacaaagnttgtatttgtcctcttg 293
           ||||||              |||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 cgccta-------gaccaaccttggaaattgcatggacaaagtttgtatttgtcctcttg 493

                                                                       
Query: 294 tctccagctctgagcatggtttaagactcaccgttaagagcccagggaaccagccggacg 353
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 494 tctccagctctgagcatggtttaagactccccgttaagagcccagggaaccagccggacg 553

                                                                       
Query: 354 tggtggcgcacgactttaatcccagaactagggaggcagaggcaggtgcatttctgagtt 413
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tggtggcgcacgactttaatctcagaactagggaggcagaggcaggtgcatttctgagtt 613

                   
Query: 414 cgaggcca 421
           ||||||||
Sbjct: 614 cgaggcca 621


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)