BAC Information

Click to search

BAC

Clone NameMSMg01-463I19
Chromosome4 (Build37)
Map Location 72,726,533 - 72,726,900
singlet/doubletsinglet
Overlap genenone
Upstream geneTle1, Aldoa-ps2, EG384113, LOC667713, LOC100039698
Downstream geneOTTMUSG00000001246, LOC100039726, LOC667722, LOC623115, OTTMUSG00000000281, OTTMUSG00000000280, OTTMUSG00000000282, OTTMUSG00000000283, Gm428, Rasef, LOC667768, LOC545637, LOC623272, OTTMUSG00000014862, OTTMUSG00000004010, 2310002L09Rik, Frmd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463I19.T7 (MSMg01no463_i19.b1)MSMg01-463I19.TJ (MSMg01no463_i19.g1)
ACCAG548176AG548177
length741771
length of high quality
(start - end)
375 (194 - 568)526 (78 - 603)
definitionCHROMAT_FILE: MSMg01no463_i19.b1 PHD_FILE: MSMg01no463_i19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:00 2005CHROMAT_FILE: MSMg01no463_i19.g1 PHD_FILE: MSMg01no463_i19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCATTATGTGCCCATTCTCGGCTCCTCCTTTTCCCCATTT
TTGTCCTAATCTTTACAGGGAGAGAAATCACTAACAAGGCCATGAGGATG
TTGGGGATGGATTTAAGACAGGGAGAAAGAACAGAANAAGTGGTTGTTAT
ATAAAAAAATAATTAATGCATTATTTCATAAAGTTTACTGCCTGAAGAGT
AGCAGGCTTCTAAAGGGGTTCAAGTGCAGGTTTGAATGTAAGAGTATAGG
ACTAGGATTAAGGAAGAATGAACATGTTTCTCTATTGTGAGAAGTCATTG
TATCTGAAGCAGGGGGTGGGGCAGAGTATATTTTGTGGGCCTACTGATGT
TTTAAATGAGACTGTGTGTAAACACGAAACATGTTAAATATATAANAGTC
TCAGTTATAAATATTGGTACAAAGCAGAGCTTGGTGGTGCATGCCTTAAT
CCCAGCACTCGGGTGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCAGC
CTGGTCTACAATTTGAGTTCCAGGACAGCCAGGACTATACAGAGAAACCC
TGTCTTGAGAAACCAAATAAATAAATAAATAAATAAATAAATATATAAAT
TAATAAATAAATAAATAAATATTGGTAACAAAACTCATTAATTCTACCTA
TTCTATTGTGTGTACGCTGTACCTCTTAGCAGAAAAGATAG
NNNTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCTTCGAGAGACAGCTCTTAG
CCGGCAATTTGGCCTTAGGAGAAATTAAACAATTCTTTTAGTTGACTTTG
TGTCAACCAATTACCATGTGATCTGATTTTGGGATTATGTGACACATCAA
ACCAGAAATTTTGATATGCATAGTGGTAATTTGTCACCAAATAGAAATAT
AATGTATATATAACATATATATATATATATATATATATATATATACATAC
ATATATATATACATACATATATATGTATATATGTGTGTGTATAATATTAT
AAATATATCACATACTATTTGCCACATGTAGTATCAATATGTGCTAATAT
ATCAGCATATCTATATATCTATTTATATTATCTATATCATATATATCAAT
ATAATCTATATAGATGTATATCTATCAAATCTATCTCTACATACATATCT
ACACACATATACATACATATATGTATATATATTGCAGGGTAGTTCTCTAG
AACATCCTCTTTCTTTTATTGCAGGATTCATGGATTCAGGAAAATAAAGC
TAGAAATGGCAATTTTTCCCTTTGCTGTTTCCATAATGACAAAGAAAACT
TTCGTTTCCTTTCTCCTTGTGTTCCTTTTAGGCCAGGAAATTTTTGGTTT
TCCGGAAGAAATGTTTCTTGCCTCCCCACCCCAAATATTGCCTTTAATAA
AAAAATTTTACCTACCCGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_i19.b1 MSMg01no463_i19.b1 CHROMAT_FILE:
MSMg01no463_i19.b1 PHD_FILE: MSMg01no463_i19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:00 2005
         (375 letters)



>mm_chr4_72726398_72727172
          Length = 775

 Score =  598 bits (309), Expect = e-175
 Identities = 353/368 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgttatataaaaaaataattaatgcattatttcataaagtttactgcctgaagagtagc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 503 ttgttatataaaaaaataattaatgcattatttcataaagtttactgcctgacgagtagc 444

                                                                       
Query: 61  aggcttctaaaggggttcaagtgcaggtttgaatgtaagagtataggactaggattaagg 120
           |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 443 aggcttctaaaggggttcaagtacaggtctgaatgtaagagtataggactaggattaagg 384

                                                                       
Query: 121 aagaatgaacatgtttctctattgtgagaagtcattgtatctgaagcagggggtggggca 180
           ||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 383 aagaatgaacatgtcactctattgtgagaagttattgtatctgaagcagggggtggggca 324

                                                                       
Query: 181 gagtatattttgtgggcctactgatgttttaaatgagactgtgtgtaaacacgaaacatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gagtatattttgtgggcctactgatgttttaaatgagactgtgtgtaaacacgaaacatg 264

                                                                       
Query: 241 ttaaatatataanagtctcagttataaatattggtacaaagcagagcttggtggtgcatg 300
           |||||||||||| ||||||||||||||||||||||||||||| |||||||||||  || |
Sbjct: 263 ttaaatatataaaagtctcagttataaatattggtacaaagccgagcttggtggcacacg 204

                                                                       
Query: 301 ccttaatcccagcactcgggtggcagaggcaggtggatttctgagtttgaggccagcctg 360
           ||||||||||||||||| || |||||||||||||||||||||||||| |||| |||||||
Sbjct: 203 ccttaatcccagcactcaggaggcagaggcaggtggatttctgagttcgaggacagcctg 144

                   
Query: 361 gtctacaa 368
           ||||||||
Sbjct: 143 gtctacaa 136


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)