BAC Information

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BAC

Clone NameMSMg01-464C13
Chromosome4 (Build37)
Map Location 94,136,608 - 94,137,190
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74, Tek, 4930579C15Rik, LOC100039252, Mysm1, LOC100039265, LOC665029, Jun, LOC100042411
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464C13.T7 (MSMg01no464_c13.b1)MSMg01-464C13.TJ (MSMg01no464_c13.g1)
ACCAG548640AG548641
length755741
length of high quality
(start - end)
281 (73 - 353)583 (74 - 656)
definitionCHROMAT_FILE: MSMg01no464_c13.b1 PHD_FILE: MSMg01no464_c13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:49 2005CHROMAT_FILE: MSMg01no464_c13.g1 PHD_FILE: MSMg01no464_c13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGAGCCGCGGA
AGTCTTTAATGACGCAGACCAAATGGAACTAAAAAGATGGTTGAGCAGTT
AAGAGCACTTTCTGCTCCTGCAGAGGACTCAGGTTCCTTTCCTAGACATC
ACACTGTGGCTCCTAAGTACCTGTAATCCCAGATGCGGAATACTGAAGCT
CTTTCTGGCCTCCACAGACACCAAGCAGACACATGATACTCATACTTACA
TGAGGGACTCACACATACAAATAAAGTTTTTTTAAAAATAAAAGCTGGGG
TGGGGGAGCTTGTGTTTTGCTTTTGGGATAGCATTGGAAATGTAAATGAA
ATATATACTCAATTAAAAAAATAAAAATAAAATAATAATAAAAATGTACA
AGCTGAATAAAGTACAACTCTGGAAACTCTTAGCTATTACAATCAGAGAT
TAGTTTCTAGACCTTAAATAAAAAAAAAAAACAAGTCAGGACACATACGC
ACACATGATAACAAAAATCAGTTCAAATCGAACCATAGGATGGGCGGTAA
GAAAGGTGAAATGGTTTGCTACAAACATGAGAATCTAGATTGCATCTAAC
ACTGACCTCCCCTCCCCCCCGTATAGGTAAGCCCACCATCCACGTCTATT
TTATAACAATGCCCATCATAGAAATGCAGGCTTGACCATATAGCTCATTG
GGGGAACCTTTCTATGTTTGCCTTTACTTCAATCCCCTACCTCTCGCCCC
CTACA
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTAACTAAAAAATTCCAACCAATAGCACACTGTGTTCAAACC
TCTCTGCAGGTCAAGGACTGAAGAGAGCAAGAAATGAATATGAAAGGAAA
GAACAAAGAAGAAGCACCCAGAGGACTCTACTGGAACAGGATACAGGGAC
GAGTGCTTGTTATGAGGAGCCAGTGGGATGGGCTCTTTGTGGTAGGTAAC
AGTTGATCATTAAAACATTAAAAGGGGTTCAAAGCATGAATGGTCTGGAA
TCCATGTAAGACTATTTCTTCTTGTCTATTTAATGAAATGGAAGGGGGAG
TCTAAAGACGGTAAGTCCCAGAACCATGGCTAGGTCTATGACAAAGCTGT
ACCTATACCAGGGCCCTTGTCATACTTCACTGTCCTCTGCCCACATGACT
GTCCCATTCTCTCATCATCACCAAGCCAATGGTTGTTCCCACATTTATGG
AGCAACTTTCTGTGTCTTAAAACACACTTTGAAACATAAACACAATGTTT
TTTACATCAAAAGCTCCCTTTGACTTGAAGATCTTTTGCTGCATGCTAAC
AGAAGAAAGTGCATTGAGCATTTGTTCAGCAAATGCCCCATCAGTGCCTA
CTATGTGTCAGGTACACCAAAACAAATAGTACAGATGCTCTCATCAAGAA
GCCTGTGAATACACTTAGCTATGTAGAGCACATCTGCGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_c13.g1 MSMg01no464_c13.g1 CHROMAT_FILE:
MSMg01no464_c13.g1 PHD_FILE: MSMg01no464_c13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:49 2005
         (583 letters)



>mm_chr4_94136408_94137390
          Length = 983

 Score = 1073 bits (555), Expect = 0.0
 Identities = 576/583 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaccaatagcacactgtgttcaaacctctctgcaggtcaaggactgaagagagcaagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaccaatagcacactgtgttcaaacctctctgcaggtcaaggactgaagagagcaagaa 260

                                                                       
Query: 61  atgaatatgaaaggaaagaacaaagaagaagcacccagaggactctactggaacaggata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgaatatgaaaggaaagaacaaagaagaagcacccagaggactctactggaacaggata 320

                                                                       
Query: 121 cagggacgagtgcttgttatgaggagccagtgggatgggctctttgtggtaggtaacagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagggacgagtgcttgttatgaggagccagtgggatgggctctttgtggtaggtaacagt 380

                                                                       
Query: 181 tgatcattaaaacattaaaaggggttcaaagcatgaatggtctggaatccatgtaagact 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgatcattaaaacattaaaaggcgttcaaagcatgaatggtctggaatccatgtaagact 440

                                                                       
Query: 241 atttcttcttgtctatttaatgaaatggaagggggagtctaaagacggtaagtcccagaa 300
           |  |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 441 acctcttcttgtctatttaatgaaatgaaagggggagtctaaagacagtaagtcccagaa 500

                                                                       
Query: 301 ccatggctaggtctatgacaaagctgtacctataccagggcccttgtcatacttcactgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccatggctaggtctatgacaaagctgtacctataccagggcccttgtcatacttcactgt 560

                                                                       
Query: 361 cctctgcccacatgactgtcccattctctcatcatcaccaagccaatggttgttcccaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctctgcccacatgactgtcccattctctcatcatcaccaagccaatggttgttcccaca 620

                                                                       
Query: 421 tttatggagcaactttctgtgtcttaaaacacactttgaaacataaacacaatgtttttt 480
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 621 tttatggagcaactttctgtgtcttaaaacacactatgaaacataaacacaatgtttttt 680

                                                                       
Query: 481 acatcaaaagctccctttgacttgaagatcttttgctgcatgctaacagaagaaagtgca 540
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 681 acatcaaaagctccctttgacttcaagatcttttgctgcatgctaacagaagaaagtgca 740

                                                      
Query: 541 ttgagcatttgttcagcaaatgccccatcagtgcctactatgt 583
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttgagcatttgttcagcaaatgccccatcagtgcctactatgt 783


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space:   557529
Effective search space used:   557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)