BAC Information

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BAC

Clone NameMSMg01-464F06
Chromosome4 (Build37)
Map Location 135,894,130 - 136,046,690
singlet/doubletdoublet
Overlap geneHnrpr, Htr1d, LOC100042540, Luzp1
Upstream geneSrrm1, A330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik, Il28ra, Il22ra1, LOC665334, Myom3, Fusip1, Pnrc2, Cnr2, Fuca1, Hmgcl, Gale, Lypla2, 1110049F12Rik, LOC669445, Tceb3, Rpl11, Id3, E2f2, Ddefl1, Tcea3, Zfp46
Downstream geneAof2, LOC667080, LOC433770, 4930549C01Rik, BC029684, Ephb2, C1qb, C1qc, C1qa, Epha8, Zbtb40, Wnt4, Cdc42, LOC665533, LOC242711, Ela3, 1700013G24Rik, Hspg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464F06.T7 (MSMg01no464_f06.b1)MSMg01-464F06.TJ (MSMg01no464_f06.g1)
ACCAG548770AG548771
length754751
length of high quality
(start - end)
485 (75 - 559)415 (87 - 501)
definitionCHROMAT_FILE: MSMg01no464_f06.b1 PHD_FILE: MSMg01no464_f06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:03 2005CHROMAT_FILE: MSMg01no464_f06.g1 PHD_FILE: MSMg01no464_f06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,046,206 - 136,046,690)(135,894,130 - 135,894,544)
sequence
NNCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAATTCTTACCACTCAACAGGTGGTTCACAGTCACCTGTAACT
CCTGCTCCAGTGGACTCGTACTCTTCTGCCTTCTCTGCACACCTGTACTC
ACACACACACCTGCACATATCTCTCTCTCTCTCACACACACACACACACA
CACACACACACACAAATATAGTAATAATGAATGAAGTGTAAAGAAATGGA
GCTTAGCTTTCTCATGCTAAGACAATTTTGATAAACAGAATTTGTAATTT
TAGATGGTAAAAAATGAAGACAGTTAAGTTAAAGAACTGTGTGACTACAG
AGTACAGCTTAAATGGAGAAACAACAGGCAGGTTCTGGACACCACAAACA
TTACATCTTCAGCACTACACAGTGCAATGTCTCCAAGAGGATCTTCAAAA
ACCAGTTTCCCAGAAATTGGACCCTAAAACATCCTTTAATTTCATTTACC
AAAAACAGAATTTGCTAGACTATCATCAACAGTTTGTTTGTGTCCATTTG
TTTGTTGAAGTAGACATTTGTTTTTTGTTTCTTTTGNNGGGGTTGTTTTT
TGTTTAAANTTTNNNNNNTTTTNNNNNTTTTTTNTTTNTNNNTTTNNNTT
TTCTTTTTTTTTCCCCTCCCTCCCCCGTTCCTTTTTCCCTCTCCTCCCTT
CCCCCCTTTTCTCCCCCCCCTCCCCTTTCCTCCCCCCTCCCCTCTATTTT
TTCC
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCCGAGAAAGCCT
GTCTTTATAGTTTTTGCTTTTTTGGTGGTGTATTGGCATTTCTTTGCTCT
GCTTTTAGTTTGGGTGCAGTAAGTCCTATGCTGGATATGATCAGAACTTA
GTGTCCTGTTGAGTTTCAGACAGCTATATTCAACTCATTTTTGCATTTCA
CAGTCTTAAAACATATGTGCAAAACTTAGATAATGAACATCACATCTTTA
TTGATATCTGAAAAGTTAGTTTTTGTATGATTTTTATTGCTGCTGGCATT
TCCCCAGGTGTGGATTGTTTCTAGGATTGATTATTTGGAAAAAGGAGTTT
GGCTAAATGAAACTTTTTTTTAAACCTTTAGATTTGCATATTTATTTTAT
GTGTATGGGTGTTTTGCTTGTGTGCATATGTACCACGTGTGTGCCTGGTG
CCCTCAGGAGGTCAGAAGATAGCATCAGATCCTTTGACATTGGAGTTGGG
GATGGTGGTGAGCCTCTGTGCGAGTACTGGGAACTGGACCATCTTCCAGC
TCCTCTTTTACCTCCAAAAAAAAATGAGAAGGTATGCCTTTTGCCCCCAC
CCTTTTTTTTGTCCAAACATAGGGGGAGAATTCCCTTTTTTGGTTAGGCG
TGTTGTTAACNTACCATTTTTTACAATGTTTCCAGAAACCACCTCTTTCT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_f06.b1 MSMg01no464_f06.b1 CHROMAT_FILE:
MSMg01no464_f06.b1 PHD_FILE: MSMg01no464_f06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:03 2005
         (485 letters)



>mm_chr4_136045866_136046750
          Length = 885

 Score =  938 bits (485), Expect = 0.0
 Identities = 485/485 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggtggttcacagtcacctgtaactcctgctccagtggactcgtactcttctgccttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 caggtggttcacagtcacctgtaactcctgctccagtggactcgtactcttctgccttct 766

                                                                       
Query: 61  ctgcacacctgtactcacacacacacctgcacatatctctctctctctcacacacacaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 ctgcacacctgtactcacacacacacctgcacatatctctctctctctcacacacacaca 706

                                                                       
Query: 121 cacacacacacacacacacaaatatagtaataatgaatgaagtgtaaagaaatggagctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 cacacacacacacacacacaaatatagtaataatgaatgaagtgtaaagaaatggagctt 646

                                                                       
Query: 181 agctttctcatgctaagacaattttgataaacagaatttgtaattttagatggtaaaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 agctttctcatgctaagacaattttgataaacagaatttgtaattttagatggtaaaaaa 586

                                                                       
Query: 241 tgaagacagttaagttaaagaactgtgtgactacagagtacagcttaaatggagaaacaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tgaagacagttaagttaaagaactgtgtgactacagagtacagcttaaatggagaaacaa 526

                                                                       
Query: 301 caggcaggttctggacaccacaaacattacatcttcagcactacacagtgcaatgtctcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 caggcaggttctggacaccacaaacattacatcttcagcactacacagtgcaatgtctcc 466

                                                                       
Query: 361 aagaggatcttcaaaaaccagtttcccagaaattggaccctaaaacatcctttaatttca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 aagaggatcttcaaaaaccagtttcccagaaattggaccctaaaacatcctttaatttca 406

                                                                       
Query: 421 tttaccaaaaacagaatttgctagactatcatcaacagtttgtttgtgtccatttgtttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tttaccaaaaacagaatttgctagactatcatcaacagtttgtttgtgtccatttgtttg 346

                
Query: 481 ttgaa 485
           |||||
Sbjct: 345 ttgaa 341


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space:   415625
Effective search space used:   415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no464_f06.g1 MSMg01no464_f06.g1 CHROMAT_FILE:
MSMg01no464_f06.g1 PHD_FILE: MSMg01no464_f06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:03 2005
         (415 letters)



>mm_chr4_135893930_135894744
          Length = 815

 Score =  795 bits (411), Expect = 0.0
 Identities = 414/415 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcccgagaaagcctgtctttatagtttttgcttttttggtggtgtattggcatttctttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcccgagaaagcctgtctttatagtttttgcttttttggtggtgtattggcatttctttg 260

                                                                       
Query: 61  ctctgcttttagtttgggtgcagtaagtcctatgctggatatgatcagaacttagtgtcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctgcttttagtttgggtgcagtaagtcctatgctggatatgatcagaacttagtgtcc 320

                                                                       
Query: 121 tgttgagtttcagacagctatattcaactcatttttgcatttcacagtcttaaaacatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttgagtttcagacagctatattcaactcatttttgcatttcacagtcttaaaacatat 380

                                                                       
Query: 181 gtgcaaaacttagataatgaacatcacatctttattgatatctgaaaagttagtttttgt 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgcaaaacttagataatgaatatcacatctttattgatatctgaaaagttagtttttgt 440

                                                                       
Query: 241 atgatttttattgctgctggcatttccccaggtgtggattgtttctaggattgattattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgatttttattgctgctggcatttccccaggtgtggattgtttctaggattgattattt 500

                                                                       
Query: 301 ggaaaaaggagtttggctaaatgaaacttttttttaaacctttagatttgcatatttatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaaaaaggagtttggctaaatgaaacttttttttaaacctttagatttgcatatttatt 560

                                                                  
Query: 361 ttatgtgtatgggtgttttgcttgtgtgcatatgtaccacgtgtgtgcctggtgc 415
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttatgtgtatgggtgttttgcttgtgtgcatatgtaccacgtgtgtgcctggtgc 615


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)