Query= MSMg01no464_g16.b1 MSMg01no464_g16.b1 CHROMAT_FILE:
MSMg01no464_g16.b1 PHD_FILE: MSMg01no464_g16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:11 2005
(235 letters)
>mm_chr4_103138248_103138887
Length = 640
Score = 377 bits (195), Expect = e-109
Identities = 227/241 (94%), Gaps = 11/241 (4%)
Strand = Plus / Plus
Query: 1 ctgctcttcttc-gac-tcccctcctctcctga-agccctggtcacctgatagaccagag 57
|||||||||||| ||| ||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 201 ctgctcttcttctgacctcccctcttctcctgacagccctggtcacctgatagaccagag 260
Query: 58 aagacaa-tcatattaataaggagcctgtgcacactgggcatgctcacacctgccatccc 116
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagacaaatcatattaataaggagcctgtgcacactgggcatgctcacacctgccatccc 320
Query: 117 attggaaccttatgacaacctatgtgaagctaagtaccaaacaaagagaatatttgc--- 173
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 321 attggaaccttatgacaacctatgtgaagctaagtaccaaacaaagagaaaa---gcaag 377
Query: 174 -ctgtgagcagtacagtaacgactcccttcacaatagatgtatttaagtgtaagcaggag 232
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 378 cctgtgagcagtacagtaactactcccttcacaatagatgtatttaagtgtaagcaggag 437
Query: 233 g 233
|
Sbjct: 438 g 438
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 640
Length adjustment: 9
Effective length of query: 226
Effective length of database: 631
Effective search space: 142606
Effective search space used: 142606
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no464_g16.g1 MSMg01no464_g16.g1 CHROMAT_FILE:
MSMg01no464_g16.g1 PHD_FILE: MSMg01no464_g16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:11 2005
(474 letters)
>mm_chr4_103260006_103260878
Length = 873
Score = 862 bits (446), Expect = 0.0
Identities = 472/492 (95%), Gaps = 19/492 (3%)
Strand = Plus / Minus
Query: 1 attcagagtcttccatgtgcaatcccatttattttaacaagccttaaattatttccctat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 attcagagtcttccatgtgcaatcccatttattttaacaagccttaaattatttccctat 644
Query: 61 atttttgaccctataattttaggcaggattt------------------cacacacacac 102
||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 643 atttttgaccctataattttaggcaggatttcacacacacacacacacacacacacacac 584
Query: 103 acacacacacacacacacacataatttccaatcccccacttttaactaccttgaaaatta 162
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 583 acacacacacacacacacacacaatttccaatcccccacttttaactaccttgaaaatta 524
Query: 163 ggagggacctagttatatggaggagttgatttgacagcttagtcagaaagatctgatttg 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ggagggacctagttatatggaggagttgatttgacagcttagtcagaaagatctgatttg 464
Query: 223 aatattgactctgacatttatgtgtatgcttataacaatttaattgttcagttaaaagtt 282
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 463 aatattgactctgacatttatgtg-atgcttataacaatttaattgttcagttaaaagtt 405
Query: 283 attcctttgaagccacacttcaatccacaatggactaatggataatgtatgctaaaaaca 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 attcctttgaagccacacttcaatccacaatggactaatggataatgtatgctaaaaaca 345
Query: 343 aatataaaagttgaagatgttcaatgagaggagaggcccttggctttgtgaaggctcgat 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 aatataaaagttgaagatgttcaatgagaggagaggcccttggctttgtgaaggctcgat 285
Query: 403 gccctggtatagaggaatgccaggacagggaagctggagtgggtgcattagtgatcaagg 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 gccctggtatagaggaatgccaggacagggaagctggagtgggtgcattagtgatcaagg 225
Query: 463 ggatgggggaat 474
||||||||||||
Sbjct: 224 ggatgggggaat 213
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 76
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 873
Length adjustment: 10
Effective length of query: 464
Effective length of database: 863
Effective search space: 400432
Effective search space used: 400432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
