Query= MSMg01no464_g23.b1 MSMg01no464_g23.b1 CHROMAT_FILE:
MSMg01no464_g23.b1 PHD_FILE: MSMg01no464_g23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:12 2005
(283 letters)
>mm_chr4_69879885_69880567
Length = 683
Score = 472 bits (244), Expect = e-137
Identities = 274/284 (96%), Gaps = 2/284 (0%)
Strand = Plus / Minus
Query: 1 aaacctatgagagaccctttcaacaaacaaggt-gtatggtaagtaagaaatgataccca 59
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 560 aaacctatgagagaccctttcaacaaacaaggtggt-tggtaagtaagaaatgataccca 502
Query: 60 agattgtctatgacctccctgtatgtacatccatccaaacattcacataaacctggagat 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agattgtctatgacctccctgtatgtacatccatccaaacattcacataaacctggagat 442
Query: 120 gagtcctatcagcaggcaggtgacagccctggaacatctgcaagaggccagttctatacc 179
||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 441 gagtcctatcagcgggcaggtgacagccctggaacatccgcaagaggccagctctatacc 382
Query: 180 caggaagacccaacctttctgatcctggtagctgcaaggcagatgctagcaggatgagag 239
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caggaggacccgacctttctgatcctggtagctgcaaggcagatgctagcaggatgagag 322
Query: 240 agagcctatgaagcaaggggcttcgacctgaacgtgatttccaa 283
||||||||||||||| |||| ||||||||||| |||||||||||
Sbjct: 321 agagcctatgaagcagggggtttcgacctgaaggtgatttccaa 278
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space: 184676
Effective search space used: 184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no464_g23.g1 MSMg01no464_g23.g1 CHROMAT_FILE:
MSMg01no464_g23.g1 PHD_FILE: MSMg01no464_g23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:12 2005
(486 letters)
>mm_chr4_69704415_69705300
Length = 886
Score = 917 bits (474), Expect = 0.0
Identities = 483/486 (99%)
Strand = Plus / Plus
Query: 1 tttgtgcattcacacaaggataggtagaggcatcgattcaaggcatatataactagaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtgcattcacacaaggataggtagaggcatcgattcaaggcatatataactagaaat 260
Query: 61 gcatgctcatgtgagtcttacaggccacaaactggtgtgacatagtgtgtagtgttctaa 120
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 261 gcatgctcatgtgagtcttacaggacacaaactgatgtgacatagtgtgtagtgttctaa 320
Query: 121 cacaaggcaatatgctgggcatctctgccacccactggctaattactaatagcttctctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacaaggcaatatgctgggcatctctgccacccactggctaattactaatagcttctctg 380
Query: 181 aacactgggacaatcaaatatactctgtcataaataccaaaagtgttcttcaagggcatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacactgggacaatcaaatatactctgtcataaataccaaaagtgttcttcaagggcatt 440
Query: 241 gctgtgtcactcatgattgcagcagcctgactgatcctagggtccatatcaaagtctcag 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctgtgtcactcaggattgcagcagcctgactgatcctagggtccatatcaaagtctcag 500
Query: 301 ttgtgtcttcttactgtctccccagtcatggccatatccaaattattcaaatcatccaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgtgtcttcttactgtctccccagtcatggccatatccaaattattcaaatcatccaag 560
Query: 361 tccaagtcagaaagcttcagtaaaggctgcaaggcaagcatgctgcagcatgggcggccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccaagtcagaaagcttcagtaaaggctgcaaggcaagcatgctgcagcatgggcggccc 620
Query: 421 ctggggtgcatactcccagctgaggctgcctccaaggataatgtttgtagacaaagtgtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctggggtgcatactcccagctgaggctgcctccaaggataatgtttgtagacaaagtgtg 680
Query: 481 agcaag 486
||||||
Sbjct: 681 agcaag 686
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space: 416976
Effective search space used: 416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
