BAC Information

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BAC

Clone NameMSMg01-464K14
Chromosome4 (Build37)
Map Location 34,508,647 - 34,508,883
singlet/doubletsinglet
Overlap gene2700059D21Rik
Upstream geneRngtt, LOC100041919, LOC100041924, Cnr1, Spaca1, LOC100039220, LOC665361, LOC665367
Downstream geneOrc3l, Rars2, Slc35a1, 1700003M02Rik, Gm136, 1810030N24Rik, Zfp292, Cga, Mobkl2b, Ifnk, 3110043O21Rik, LOC620559, LOC621227
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464K14.T7 (MSMg01no464_k14.b1)MSMg01-464K14.TJ (MSMg01no464_k14.g1)
ACCAG549023AG549024
length742760
length of high quality
(start - end)
334 (74 - 407)239 (73 - 311)
definitionCHROMAT_FILE: MSMg01no464_k14.b1 PHD_FILE: MSMg01no464_k14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:30 2005CHROMAT_FILE: MSMg01no464_k14.g1 PHD_FILE: MSMg01no464_k14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAAGATGATCCGC
GGAANTCTTTGCTGACATCCATTTTTTAATTGGGTTATTTGGTTTTTTGG
AGTCTAACTTCTTGGGTTCTTTGGATATTTGGATATTAGTCCCCTATCAG
ATGTAAGATTGGTAAATCTTTTCCCAGTCTGTAGGACATTAACAATGTCC
TTTGCCTTACAGAATCTTTTCTGTTTCATGAGGTCCCATTTGTCAACTGT
TGATCTTAGAGCCTGAGCCATTGGTGTTCTGTTCAGGAAACTTTATCCTG
TGCTGATATGTTCAATGTTTTTCCCCACTTTCTCTTTTATTAGATTCAGT
GTACCTGGTTTTATGTGGAGGTCCTTGATTCACTTGGACTTGAGCTTTGT
ACTAGAAGATAAGAATGGATCAACTTGCATTCTTCTGCATGCTGATCTCC
AGTCAGACCAGCACCATTTATTGAAAATGCTTTTTTTTTTTCCACTGCAT
GGCTTTTGGCTTCTTTGTCAAAGATCAAGTGATCATAGGAGTGCGGGTTT
ATTTCTGGGCCTCCTAATCTATTCCATTGATCTACCTGCCTGTCTATGCA
CTACTATTTTGTTTTTTTCATCCTCATTGTTCTATACCTCTTCCTTGTTC
CTTGCTACGGCTTTTCCTTCTTTATCCTCCCCCTTTCTTTACAATCCTTC
TTCGTTTCCCTTTGTTTTTTTTTTTTCCCCCTTACTTCACTC
ACGATGATAGTGGAGGCCTGGNGGNCGGCTGGTTCTCAAATTTAGGTGAA
CTATAGAATATCTGCAGCAATTCACTCTTTGTGCAGTTTTTATTGCATGT
CTTCACTTTTGCTTTCAATTGGGATTAATAATAAACTTGTTGGAATTTAG
TTCCACATCGAGCTAAAGAAGTTACTGAGAAAATCTGTAGATACAGGGAT
AAGGGGGAGTGGAAACCTCGGGGGTGGGGGGGTGCATTTCCTACATATCA
AATGGTCCCTTATTTTTCGTTACAAATTGTGGTAAAGTGAACTAATTCTG
TTGGCTCAAAAATGTTTTGCTGGGTATAATTTTATGCTTCAGTGGCTATG
TAAAGGATAACTGCCTTGTACGACAGTGGTCCTTGTGTATTGCTGTATCA
TATTGTTTCATATGAGCTTTTCTCCCCAAGATGCAGAATGCTTTGTTGTT
AATGCTAGAACGAACAGTTTCATCATGCTTCATATCAATGACAATTTGAT
TTATGATATAATTTTAATTCTCTTGTCCTTTGTCCTTTTAGACTTATGCT
TGAATGTACATAATCCTTTCCCATTACTGGCAATACTTGGTTAAGTACTT
CTACATGTAATAGACACTTGCTCCTCCGACATTTCCCCTGATCTAATCCG
TTTTGTTACCATGTTCCATTTCTTTGGCACCCTGCTTTCTGAGTACATAC
GTTTATCCTTTTTTTTCTTATCACTCCCCATTTCTCCCCCTTGTTGTTAT
CTACTTTACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_k14.g1 MSMg01no464_k14.g1 CHROMAT_FILE:
MSMg01no464_k14.g1 PHD_FILE: MSMg01no464_k14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:30 2005
         (239 letters)



>mm_chr4_34508447_34509083
          Length = 637

 Score =  431 bits (223), Expect = e-125
 Identities = 235/239 (98%), Gaps = 2/239 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactctttgtgcagtttttattgcatgtcttcacttttgctttcaattgggattaataat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactctttgtgcagtttttattgcatgtcttcacttttgctttcaattgggattaataat 260

                                                                       
Query: 61  aaacttgttggaatttagttccacatcgagctaaagaagttactgagaaaatctgtagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacttgttggaatttagttccacatcgagctaaagaagttactgagaaaatctgtagat 320

                                                                       
Query: 121 acagggataagggggagtggaaacctcgggggtgggggggtgcatttcctacatatcaaa 180
           |||||||||||||| ||||||||||| |||||||||||| ||||||||||||| ||||||
Sbjct: 321 acagggataagggg-agtggaaaccttgggggtgggggg-tgcatttcctacagatcaaa 378

                                                                      
Query: 181 tggtcccttatttttcgttacaaattgtggtaaagtgaactaattctgttggctcaaaa 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tggtcccttatttttcgttacaaattgtggtaaagtgaactaattctgttggctcaaaa 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 637
Length adjustment: 9
Effective length of query: 230
Effective length of database: 628
Effective search space:   144440
Effective search space used:   144440
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)