BAC Information

Click to search

BAC

Clone NameMSMg01-464P04
Chromosome4 (Build37)
Map Location 81,579,572 - 81,580,041
singlet/doubletsinglet
Overlap genenone
Upstream geneD4Bwg0951e, Mpdz, LOC100040131, LOC100040144, EG668895
Downstream geneLOC100040164, EG545641, Nfib, Zdhhc21, Cer1, Frem1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464P04.T7 (MSMg01no464_p04.b1)MSMg01-464P04.TJ (MSMg01no464_p04.g1)
ACCAG549243AG549244
length742744
length of high quality
(start - end)
667 (48 - 714)612 (79 - 690)
definitionCHROMAT_FILE: MSMg01no464_p04.b1 PHD_FILE: MSMg01no464_p04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:52 2005CHROMAT_FILE: MSMg01no464_p04.g1 PHD_FILE: MSMg01no464_p04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:52 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTTGGGCTCTTCCTGTGACTGAGCCTTATCTAACAGCAAACTG
GATATGCAGTTTCTCTCGATTAGAGATGGAATTTTTAAAAATCTTGTTGT
CCTCCCTGAAACCTCCTGTAGTGAGGGAGAACAAAGTATGCTGTCACAGG
CATTTTCTTTACTGGAAATGATTATTGAGTGACAGTAGCTTCTCTAGCTG
TGAAAATCAGTTCTGGGAAGTTAACAATTTTTCCAGTAAGCAAAACAAAT
ATTTTACCAATATTTATACAGGTTATATTTCACCCATAATGTATGTTCTA
TAGATTATACTTTACCCATGGATTATGGGTAGGTTATATTCCACCTGCAG
ATTATGGTCTGGAGATTGGTTTCCCTCTGGATTATCTGGTCTGGATACAT
GCTTGCTTTACCACTCTAAAGAAGGTGGGTTCAGCTCCTGTTTCACTGTT
ACTATAACCTCTCATCTTTTCATTGATGTGAAGATACCATGCTCGCCTTA
AAGCGTGGTGCTCTTCCTTGAAGGGCATGTTAACAATGGTCAAGTGTTGT
TTGGTTTTATAGTGAAGGTTTTTGAGACTCCTTGTTCTAGGATACAACAA
TGAACAATGAATCAGTCTTCATGTTTTCAGGTCAGGTCTCCCTGTATTTC
CCATTCCCAGGTGAGAAGATACTTACAAGACCCTGGCAACTN
NNCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGCTCTTAGCCCCAT
TTTTTAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTT
ATATATATATTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGAT
CCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTGTTGAAGGTGTCTTTTG
CCTTGCAGAAGCTTTGCAACTTTATGAGGTCCCATTTATCGAATCTCGAT
CTTACAGCACAAGCCACTGCTGTTCTATTCAGGAATTTTCCCCATGTACC
CATATCTTCAAGGCTTTTCCCTACTTTCGCCTCTATAAGTTTCAGTGTCT
CTGGTTTTATGTGGAGTTCCTTAATCCACTTAGATTTGACCTTAGTACAA
GGAGATAGGAATGGATCAATTCCCATTCTTCTACATGATAACCACCAGTT
GTGCCAGGACCATTTGTTGAAAATGCTGTCTTTTTTCCACTGGATGGTTT
TAGCTCCCTTGTCAAAGAACAAGTGACCATAGGTGTGTGGGTTCATCTCT
GGGTCTTCAATTCTATTCCACTGGTCTACTTGTCTGTCACTATACCAGTA
CCATGCAGTTTTTATCACAATTGCTCTGTAGTACAGCTTTAGGTCAGGCA
TGGTGATTTTGCAAGAGGTTCTTTTATCCTTGAGAAGAGTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_p04.b1 MSMg01no464_p04.b1 CHROMAT_FILE:
MSMg01no464_p04.b1 PHD_FILE: MSMg01no464_p04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:52 2005
         (667 letters)



>mm_chr4_81579368_81580434
          Length = 1067

 Score =  855 bits (442), Expect = 0.0
 Identities = 463/470 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttgggctcttcctgtgactgagccttatctaacagcaaactggatatgcagtt 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gaattccttgggcacttcctgtgactgagccttatctaacagcaaactggatatgcagtt 615

                                                                       
Query: 65  tctctcgattagagatggaatttttaaaaatcttgttgtcctccctgaaacctcctgtag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tctctcgattagagatggaatttttaaaaatcttgttgtcctccctgaaacctcctgtag 555

                                                                       
Query: 125 tgagggagaacaaagtatgctgtcacaggcattttctttactggaaatgattattgagtg 184
           |||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 554 tgagggagaacaaagtctgctgtcacaggcattttctttactggacatggttattgagtg 495

                                                                       
Query: 185 acagtagcttctctagctgtgaaaatcagttctgggaagttaacaatttttccagtaagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 acagtagcttctctagctgtgaaaatcagttctgggaagttaacaatttttccagtaagc 435

                                                                       
Query: 245 aaaacaaatattttaccaatatttatacaggttatatttcacccataatgtatgttctat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 aaaacaaatattttaccaatatttatacaggttatatttcacccataatgtatgttctat 375

                                                                       
Query: 305 agattatactttacccatggattatgggtaggttatattccacctgcagattatggtctg 364
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 374 agattatactttacccatggattatgggtaggttatattccacctgtagattatggtctg 315

                                                                       
Query: 365 gagattggtttccctctggattatctggtctggatacatgcttgctttaccactctaaag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gagattggtttccctctggattatctggtctggatacatgcttgctttaccactctaaag 255

                                                             
Query: 425 aaggtgggttcagctcctgtttcactgttactataacctctcatcttttc 474
           |||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 254 aaggtgggttcagctcctgtttcactgttactatgacttctcatcttttc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)