BAC Information

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BAC

Clone NameMSMg01-464P19
Chromosome4 (Build37)
Map Location 154,060,293 - 154,060,482
singlet/doubletsinglet
Overlap genenone
Upstream geneBC039966, A430005L14Rik, Dffb, BC046331, Lrrc47, 1190007F08Rik, Ccdc27, Trp73, Wdr8, 1200015A19Rik, Megf6, Arhgef16, Prdm16, LOC100043342, LOC100042178, Actrt2
Downstream geneB230396O12Rik, Mmel1, 2810405K02Rik, Tnfrsf14, Hes5, Pank4, LOC100043358, Plch2, Pex10, Rer1, Morn1, Ski, 2610002J02Rik, Prkcz, Gabrd, 2010015L04Rik, Tmem52, Gnb1, Nadk, A530082C11Rik, Cdc2l1, Mmp23, Mib2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464P19.T7 (MSMg01no464_p19.b1)MSMg01-464P19.TJ (MSMg01no464_p19.g1)
ACCAG549273AG549274
length784778
length of high quality
(start - end)
124 (122 - 245)190 (126 - 315)
definitionCHROMAT_FILE: MSMg01no464_p19.b1 PHD_FILE: MSMg01no464_p19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:55 2005CHROMAT_FILE: MSMg01no464_p19.g1 PHD_FILE: MSMg01no464_p19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAAATTTGCGGCGCTAAACGACTACTATATTTCTGACTCCGCGGNAATT
CCTCTGAAGTGGCATAATAGGCTGAGGNGAGCTACCTAAGGCAGGCTGCT
GGAAACTAGGCTATTAGCACTCACGCTTAACTGTTAAGCCATTTCTCCTG
CTCCCTGCCCCTTTCGATTTTGACTTTCTGGTTTGTTTGCATTTTGTGTT
TTTGAGACAAAGTCTCACTCTGTATGTAGCCCAGGTTGGCCTGCTATTCT
TTGTGGAGCTCAGGCTGTCCTCCTGTACCAATCTCCCAAGTGCTGGTATT
GCAGGTGCGAGCTTTACTGCCTTCTTGNCCCTAACTTTAAGCGGAGAACG
CCCGTTTTTTACTACTTCCTGAGACCGGCGATCCTGAGATCTCAGCCCTG
GATCCAGATCCCCAACTTGGTATATTTAAGTCATCTAGCGGATCCCAGTG
CAAATATCACACTTTCCTTGCTAGCTTCCCCATCTCCGGCGTGGCGCAGT
TTTCCATCCCTCCTGTCTCTGTTCTTTCTTCCCTTCGCACTCCGTTCATT
TCTTCTCCTCCTTCTCATCCTCTTTTTTATTACTCTTTCCCCACCAAATC
TCGCTTCTCTCACTTTTTCTACTGCCCCCTTTCTATCTCTATTCCCCATC
TTTTTTTTTTTATTTTTTTGTCCTCCCACCCCTTTACCTTATTTTTCCTC
CTTCCCTTTTCCAACTCTTTTCTCCTATCTCTTTCTATTTCTATCTATTA
CCACCCCCTATATCATCTTTCCCTTTTCCTTTAN
ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTTCTGAGAATTGATGAAAATTCCTAACA
ACTCAAACTCGTGTGACCTACCGGGATATAGCCCAAGACCATACGGCCTG
TGCAACATACAAAATCAATGAAACACCTAGGGCTGTAAGGAAGAGGGGTT
GATTTGCTCACAGGTTTCAAGGGTGGAAGAGGCTAAGAAGCTCCCCTGGT
GTATGGCAGAGCTTATGGAAGGGGAGGAGACACATCCTGAACTGAGAGGC
TGGAATGGCCGGGTAGTTCCTGGCTTAGCAATGACCACCTAGTACCTCCC
ACTGGATCTCCTTGCGTTCCCTGACTTAAGGATGGTCCACAAGGTTCAGA
CCGTGAAGCTCGCCACTTCAGCAGTGGGCCATCAGGAGACCAACAGTGAA
TACATCTCCAGCTTTGGGGAAAAAAGTTGACCAGCGAATAAAAGAGAGAG
ATCTGATTGATTCCAAGACTCCAGTGAGGAGAACATGAACGAACACAAAC
AGAAGTTTGTTTCCTAATGGAATTGGGATATCTGAAGGATTCAGCGACTG
ACTTAGATAACCTCTCATTGTCCAGAACTGCTCTTTCGCCAACTTGGGAC
CACGTTTTTTTTTTTCCCCCCTTTCTATGATCCTTTGCTTACCTTTTTTC
TTATCCACTTCCTTTCCCCCTAATAACAATGGTATCCTCTTTCCACTCTT
CTTTTCGTCTTTTCCATCGTTCTTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_p19.g1 MSMg01no464_p19.g1 CHROMAT_FILE:
MSMg01no464_p19.g1 PHD_FILE: MSMg01no464_p19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:55 2005
         (190 letters)



>mm_chr4_154060093_154060682
          Length = 590

 Score =  352 bits (182), Expect = e-102
 Identities = 188/190 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatagcccaagaccatacggcctgtgcaacatacaaaatcaatgaaacacctagggctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atatagcccaagaccatacggcctgtgcaacatacaaaatcaatgaaacacctagggctg 260

                                                                       
Query: 61  taaggaagaggggttgatttgctcacaggtttcaagggtggaagaggctaagaagctccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaggaagaggggttgatttgctcacaggtttcaagggtggaagaggctaagaagctccc 320

                                                                       
Query: 121 ctggtgtatggcagagcttatggaaggggaggagacacatcctgaactgagaggctggaa 180
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggtgggtggcagagcttatggaaggggaggagacacatcctgaactgagaggctggaa 380

                     
Query: 181 tggccgggta 190
           ||||||||||
Sbjct: 381 tggccgggta 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space:   105924
Effective search space used:   105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)