BAC Information

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BAC

Clone NameMSMg01-465D16
Chromosome4 (Build37)
Map Location 127,761,221 - 127,761,655
singlet/doubletsinglet
Overlap genenone
Upstream geneZmym6, LOC100039968, LOC621588, Dlgap3, BC003266, Gja4, Gjb3, Gjb4, Gjb5, LOC667296, LOC635169
Downstream gene4930465A12Rik, Hmgb4, 4930546G22Rik, Zscan20, Tlr12, Phc2, A3galt2, BC039093, LOC667354, Trim62, Adc, Ak2, Ibrdc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465D16.T7 (MSMg01no465_d16.b1)MSMg01-465D16.TJ (MSMg01no465_d16.g1)
ACCAG549458AG549459
length771775
length of high quality
(start - end)
435 (62 - 496)193 (64 - 256)
definitionCHROMAT_FILE: MSMg01no465_d16.b1 PHD_FILE: MSMg01no465_d16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:15 2005CHROMAT_FILE: MSMg01no465_d16.g1 PHD_FILE: MSMg01no465_d16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATGTCACTAAACGACTCACTATTTCAACAGGATCCGCGGAATTCTGGGA
CTTCCATGGCATGTAGTAGTTGTTGCTCTGGTTACCCCTGGGGACCAAAC
AGCATCATTGGGCAACAGAGCTGGTCCTAGCCACAATGTATCTCCACTGA
TACACAGATGCATGCCTTAGTCCCAGGTTCCCCTGTGAGTCCTGTAGCCT
GATACTGGTGCTTTCCATGTGTAGTCTAAGACCTTGAAACCATGGCATTC
ATTTTCTAGAGGAAGGAGTTAGTTTAGCTGGGTAAGAGGACTTCCTTCAA
CCATCCCCTATCTATATCCAGGATCAGTGTATTGGATCATAGAGTAGGAG
CTAAAACAGGACCACACCACAATGTGGACAATGTGTGCCACTGAGGGGAA
AGGCAAGCCAGATAGATGTGGCCTTTTGACCATCAACTTCTTGACCTCAA
AGAGCCTGAAATCAATAATGACATGTAGTTCTCTTATGGCCCTTGACCTC
TACGGAACAGGACACTGGCAACAGTTCATAGGGAAACCATTAAAACCAAC
CAGGACCCCTGAGACTCTGCCCTTACGCACTAAAGCAGCCTTAAAATAAA
CTACAACGCCCTTTTGCTGTTTTACTAACCAGCACCCTATTGGCCTTTTG
TTATTAATTTGAAAATTGTGGAAATTCTTGAACGTTCCTGGTGCCGGTTA
TCTTCTTTTTATTTTACCCCCGAATCCCCCCCGTTTCTCTCGCTCCTTTC
ACCCCCCCTATCCCCCTCTCC
GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTTGGAGTTGATGCAGAAGGGGTGATTCATTAGATT
AATGAGACATAGGGAGATGGATGGCTGCAACATCTGCCTGCAGTCACAGC
ACAGGGGAGGTGGAGACAGGAGGATCCCTGAGACTTCCTAGCCAGCGAGT
CTAGCCAAATCAGTGAGGTCTGGGTTCAGTGAGAGACCCAGTTTCAAATA
TAAGGTGGCTAGTAATTGAAGCAGTCATGAAATATTAGCCTCTGACCTAC
AGATTTTCTAAAGAACATGGATACACACTCAATAAATAGATAGAAAAACA
AAGAGATTGTATTCAGCTAGACCAACGTACCAATGCTGGTCCTAGAAGGC
AACGGCCGCACAGTCACATATAGAGCTAGTTTGTTTCGCAATGCTGCTGT
TTTCTATACTTTGATTACCTACCCTGCCTCTGTCATTTTCGGCTTGCCTG
CGCTATATGTGCCCCATAATCTCACCCTCCTGTCTCTTACTCCCTTCTCT
CGTCTTACGATTTTCCCCGCTCAACCCCTTCCCCTTTTCATCCCACTCGT
TATTTTTTTCTCCTTTCTTCCTTTTGTTTTTTCTTCCCCCCCCTATTCCC
CTTCCTCTTCCCCTTCCCCCCCCATCCACCCCTTCCCCCCTTCCTCTCTT
TCCTTTTTTCCATTACTCTTCCGCATTTCTTTCGCCCCTCTTTTCCCTTT
CCACTCCGTTTCCTATCTCTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_d16.b1 MSMg01no465_d16.b1 CHROMAT_FILE:
MSMg01no465_d16.b1 PHD_FILE: MSMg01no465_d16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:15 2005
         (435 letters)



>mm_chr4_127761021_127761855
          Length = 835

 Score =  818 bits (423), Expect = 0.0
 Identities = 432/435 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtagtagttgttgctctggttacccctggggaccaaacagcatcattgggcaacagagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 tgtagtagttgttgctctggttacccctggggaccaaacagcatcattgggcaacagagc 576

                                                                       
Query: 61  tggtcctagccacaatgtatctccactgatacacagatgcatgccttagtcccaggttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tggtcctagccacaatgtatctccactgatacacagatgcatgccttagtcccaggttcc 516

                                                                       
Query: 121 cctgtgagtcctgtagcctgatactggtgctttccatgtgtagtctaagaccttgaaacc 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 cccgtgagtcctgtagcctgatactggtgctttccatgtgtagtctaagaccttgaaacc 456

                                                                       
Query: 181 atggcattcattttctagaggaaggagttagtttagctgggtaagaggacttccttcaac 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 atggcactcattttctagaggaaggagttagtttagctgggtaagaggacttccttcaac 396

                                                                       
Query: 241 catcccctatctatatccaggatcagtgtattggatcatagagtaggagctaaaacagga 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 catcccctatccatatccaggatcagtgtattggatcatagagtaggagctaaaacagga 336

                                                                       
Query: 301 ccacaccacaatgtggacaatgtgtgccactgaggggaaaggcaagccagatagatgtgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ccacaccacaatgtggacaatgtgtgccactgaggggaaaggcaagccagatagatgtgg 276

                                                                       
Query: 361 ccttttgaccatcaacttcttgacctcaaagagcctgaaatcaataatgacatgtagttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ccttttgaccatcaacttcttgacctcaaagagcctgaaatcaataatgacatgtagttc 216

                          
Query: 421 tcttatggcccttga 435
           |||||||||||||||
Sbjct: 215 tcttatggcccttga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space:   351876
Effective search space used:   351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)