BAC Information

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BAC

Clone NameMSMg01-465G10
Chromosome4 (Build37)
Map Location 79,369,628 - 79,369,865
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040026, LOC100040036, LOC667922
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465G10.T7 (MSMg01no465_g10.b1)MSMg01-465G10.TJ (MSMg01no465_g10.g1)
ACCAG549590AG549591
length760749
length of high quality
(start - end)
274 (315 - 588)240 (316 - 555)
definitionCHROMAT_FILE: MSMg01no465_g10.b1 PHD_FILE: MSMg01no465_g10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:29 2005CHROMAT_FILE: MSMg01no465_g10.g1 PHD_FILE: MSMg01no465_g10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGGGCCGCTAAANGAGTCACAATACAAACAGGGGGCGCGGAANNCCAGAA
TTTCGNAAAATAGTGNCATTTCTATGAAGGTCCACCATAACTATGTGGTG
AATCCTATTTCTCATAATGGAGAAATCAGTCCCAAGCTCACTGAAAAACT
TTTCCAGAATTTCTAGTTTTGGTAGCAGAGAAAGTTGCTGTTTAGGCTGC
TGGTAGTGAAAACACATCAATGGTCTTACATATCACTGGATCTCCATGCT
ATATTATGGGTATGCCTATTGTTTTGTAGTGGGGAGTAAGTAGGAAAGTA
CATATTTGTTATTAGTGATGAGTACAGATTTAGTGTTGGGACATAAATGA
GACATTTTGATCAAGTCTTCTTCCAACACTGAATAGGCTCACAAAACAGG
AGGGTTGCACAGGAGAGAATCTTTTAAGATAAAGATGATGAATATGAGTG
CAATGAAGTGTTCTCTGGACAAGACATGATCATTGAATCCAAGAAGTCAC
ACCAGGGACAGTCATGTGCTTAAAACCTAAACACAATTAAGACCCCAATA
ATTTTCACATAGATGTGGAAGATAACTCCTATGCTGAGGTTTCCTGGATG
GTTTACAGCTGCTGAAAGAAGAAGAATCAATGCCCTTTTAGTGTATATGT
TTTATAAGCTCCATTGGATAACCGCATGCCCAAGCCTGGAAGGGAATTGT
CCCACGAATTTATTGCTTGTCTGTAATTATGTTTCAATTCTTATTTTGTG
GACCGGCCCG
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTGTTATCTGACACATTGTGAATCACAGGAGCAAAA
AACAATTGATGCAAAACTCAGAGAGCTGAAGATAAAATAATGCATAAGTG
AATCCCAGCAAACAACAAATCTTCCATATCTGGTCATGATGAAATCAAAG
AGAAATCACCACAAGGATGAGTACAAAGAAATATGCCATTCTAATAACCT
TTTCTAAGTATAAGGTACAACATGATCAAAACAGATGAAAAAAGGCTGTC
TTTAACTTTGTTGNTTAAAGTATCAAGCAACCAGTGATCACTCTAAGTAA
CATAACTATGCTCCAAACATTCTTAAATTACAGAGAAAGTAACAGAGATC
ACATCAATCTAACCATGATAGTCACAGAAGACATGTTTGTTTCAAAGGCA
ATGAATATTGCTTAATCATATCAATATGGATATTAATTCTTAATCAGATA
GAAACATTTTTCCTAGGCCATGACTTGCTGAGAACTTTACATTCATGCGG
TAGCTAGAGTAAACAAAATAAGTAACACATTAAACATTTTGATTGTCAAT
GAATTGGAAGAGAGGATAAGGGCATACATATAACAGTTTCCATTTATAAT
TGTGATAATGGGCAGCGATAATAATTGTATAACTTTATGAAGATATTTAA
TGCACGTGTTAATTTATTCCGGGCTTCTTTTAAATGAACATCCCTAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_g10.g1 MSMg01no465_g10.g1 CHROMAT_FILE:
MSMg01no465_g10.g1 PHD_FILE: MSMg01no465_g10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:29 2005
         (240 letters)



>mm_chr4_79369428_79370067
          Length = 640

 Score =  422 bits (218), Expect = e-122
 Identities = 233/238 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaagtatcaagcaaccagtgatcactctaagtaacataactatgctccaaacattctta 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaagtgtcaagcaaccagtgatcactctaagtaacataactatgctccaaacattctta 260

                                                                       
Query: 61  aattacagagaaagtaacagagatcacatcaatctaaccatgatagtcacagaagacatg 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 aattacagagaaagtaacagagatcacatcaatctaaccataatagtcacagaagacatg 320

                                                                       
Query: 121 tttgtttcaaaggcaatgaatattgcttaatcatatcaatatggatattaattcttaatc 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgttttaaaggcaatgaatattgcttaatcatatcaatatggatattaattcttaatc 380

                                                                     
Query: 181 agatagaaacatttttcctaggccatgacttgctgagaactttacattcatgcggtag 238
           |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 381 agatagaaacatttttcctatgccatgacttgctgagaactttacattcatgtggtag 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)