BAC Information

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BAC

Clone NameMSMg01-466G19
Chromosome4 (Build37)
Map Location 153,432,331 - 153,432,665
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042089, Ajap1, BC039966, A430005L14Rik, Dffb, BC046331, Lrrc47, 1190007F08Rik, Ccdc27
Downstream geneTrp73, Wdr8, 1200015A19Rik, Megf6, Arhgef16, Prdm16, LOC100043342, LOC100042178, Actrt2, B230396O12Rik, Mmel1, 2810405K02Rik, Tnfrsf14, Hes5, Pank4, LOC100043358, Plch2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466G19.T7 (MSMg01no466_g19.b1)MSMg01-466G19.TJ (MSMg01no466_g19.g1)
ACCAG550374AG550375
length765774
length of high quality
(start - end)
413 (77 - 489)335 (85 - 419)
definitionCHROMAT_FILE: MSMg01no466_g19.b1 PHD_FILE: MSMg01no466_g19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:54 2005CHROMAT_FILE: MSMg01no466_g19.g1 PHD_FILE: MSMg01no466_g19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCCTCTAAAATTTGGCGGCGCTAAACGACTCACTATTCAAAGAGGA
TCCGCGGAATTCTGCTATTCCCAGAATTACAGACTGATCCCAGAAAACAA
AAAAACAAAAAAACAAAGATTCACTTATTTATTTGGGTTATAAAATCAAT
CAACGAAAATATTCAACCACCAAAGGTACAGATCCACAGGGACCAATTGG
AAACAGTTAACAATTTTCAAAAATTAATGAAAGATATTAACTCGCCAAGG
CCTACAATTGCATTAAGTACGTATAAGTTAAGTGATTTGTTCAAACATTA
CAAGGAGATTAAACAGTCCTATATGTCTAACAACTGAAGCAGAAAAAGAG
TTAACTCTTGTAGAACAAAAACTGTAAGAAACATATGTGGATTGAACTGA
TCCTAAACTTGATTGTATGTTGGNCATTTTGCCTTCAATTCATTCTTCTG
CTGGGCTCATTATGCAAACAGAAGATAATATTATGGAATGGATTTCCTTA
GCTCATAAACCAAGGAAAAAATTAGGCCATATTATACCGAAAAGAAGTGC
GTTTTTTTTAAAAAGAGAATAAGAACAAAGCCACATGGCAAGAAAAAAAC
CTTGTTGAATATTGGTTACCCTTTATACAAGTCGTAAATCTGTTTTTTTT
TGTTGGTTCTTTGTATTATCTAACTCCCCTTTTTTTTTCTTCTTTCTTCT
TATTCCTCTCCTCTTTTTTTTCTACCCTCCTCTCCATTCTTTCTCTATTC
CACTTTTTTTTTTCA
AAAAAATCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGCCAGAGACATCT
TCTGCAGGATGTGTGGACAGATCTGTCCCTAATGTAGGTCATTCTGCCGT
TACCCCTTGTCTCCCGAGTCTTGATTGCTGGGGTCAGGGAAGACTGTGGC
AGAGCAGGGGAAGCCGCTGGCCCTCCGCCTCTAGCCAGCACCCTGAACAT
GCTGGCTGTAGCAGCCTCTAGGGACCTCTCTGGTCAGACAAAGGGACAGA
ACGAGTCTCAGACTACCGAAAATTGAATTGTCAATATTTGATAAAAGGTT
ACTCTTTCTACTTGGTGGGGTCAGCTTGCTTTTTCCCCCCTCTCTGACTC
TCTCAGCATTCCTTTCTGAGATCAGCCCAGCGGTGTCACTCTGACTTCTC
AACAAGTTCTATCTCGTCTAGTATCTTTCCCGCGATGGTTTCCTTATCTG
TTTTCACACTTGTTTTGCTTGTCATTTTTCCCTCCTTCCTTCTCTATTTT
GTTTTCTATCCCCCCTCCTCTATTCCTCATTTTCTTATTTATCTATTTTT
TTACCTTTTCCTTTTTTAGTTTTTATTTCCTATCCTCTTCCCTCCCCTTT
TTCCTTATCAATATTCTTCCCTTCTTATCCTTTCTCTTTTTTTTTTTTCT
TATTCTTTCTTTCTTTTTCCCTTACCTTAATTCTCTCTCTCCTCCTTATT
TCCCACTATTTTTCCACTATATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_g19.g1 MSMg01no466_g19.g1 CHROMAT_FILE:
MSMg01no466_g19.g1 PHD_FILE: MSMg01no466_g19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:54 2005
         (335 letters)



>mm_chr4_153432131_153432865
          Length = 735

 Score =  640 bits (331), Expect = 0.0
 Identities = 334/335 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agggccagagacatcttctgcaggatgtgtggacagatctgtccctaatgtaggtcattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 agggccagagacatcttctgcaggatgtgtggacagatctgtccctaatgtaggtcattc 476

                                                                       
Query: 61  tgccgttaccccttgtctcccgagtcttgattgctggggtcagggaagactgtggcagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tgccgttaccccttgtctcccgagtcttgattgctggggtcagggaagactgtggcagag 416

                                                                       
Query: 121 caggggaagccgctggccctccgcctctagccagcaccctgaacatgctggctgtagcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 caggggaagccgctggccctccgcctctagccagcaccctgaacatgctggctgtagcag 356

                                                                       
Query: 181 cctctagggacctctctggtcagacaaagggacagaacgagtctcagactaccgaaaatt 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 355 cctctagggacctctctggtcagacaaagggacagaatgagtctcagactaccgaaaatt 296

                                                                       
Query: 241 gaattgtcaatatttgataaaaggttactctttctacttggtggggtcagcttgcttttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 gaattgtcaatatttgataaaaggttactctttctacttggtggggtcagcttgcttttt 236

                                              
Query: 301 cccccctctctgactctctcagcattcctttctga 335
           |||||||||||||||||||||||||||||||||||
Sbjct: 235 cccccctctctgactctctcagcattcctttctga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)