BAC Information

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BAC

Clone NameMSMg01-466I07
Chromosome4 (Build37)
Map Location 50,174,959 - 50,175,183
singlet/doubletsinglet
Overlap genenone
Upstream geneE130309F12Rik, LOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742, Rnf20, Ppp3r2, LOC666663
Downstream geneLOC100040979
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466I07.T7 (MSMg01no466_i07.b1)MSMg01-466I07.TJ (MSMg01no466_i07.g1)
ACCAG550446AG550447
length741922
length of high quality
(start - end)
225 (325 - 549)---
definitionCHROMAT_FILE: MSMg01no466_i07.b1 PHD_FILE: MSMg01no466_i07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:02 2005CHROMAT_FILE: MSMg01no466_i07.g1 PHD_FILE: MSMg01no466_i07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTCTTCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGG
ATCCGCGGAATTCTGATTTTCTTCAGAAGACACAATCTTTCATCTTCAAA
GCCAGCAATGATCTGATGGGTTCATACTGCAATGTCATTCTGAGTTTGTA
TCTGTTGCCTTCCTCCACTTGTGAGAATATTGTGATAGTAATGCATGCAA
CTGAATAAAACTGGATGTATTTCTCACCTCAGGCCAGCAGAGTAGGCACC
TCAACTACATTAAGGACTCACATCTTCATTTTCATTCTCTGTATAAGCAT
TCTGTTCTGCTTGGTCTTTTTTTTAGTGCACAGTGCTCTTCTCACCCCAG
CTAGGAGAGAGGATCTTTTCTTAATATATTAAAAATAAAATAGGACCAAG
TGAACTTCTAATTTTGTGATGCTTCTAGGGTATATAACCTACTCACCAAT
GCTTTTCAATGTGATAACTACTAAAAAAGAAGGATGTGTGTGGGCCATGT
TCCACTTTGTGNTGGCAGACACTGAGTTTATATAGCTCCCCTTCATTCTT
TCAGGTCTCAAACATCTTTATCCATAAGTTGATAACACCTTTGAACCCTA
TATGTTAAGCTTAATTATAATATTTTTAAAACACCCTCATTATTTATTTT
AATATCCATAACCAAATTGTTGTTTACAACTTTATTTGACATCATTTACT
GGTCTTGTCTTACCTTTTTTCTGTAATATCTATATAATATT
TTTTCCCCCTACGCCCCTTTTTATCCGGTCAGGGCTTCGGCCCTTTCCGC
GCGTAAGGCAAATAGCGTTCGTGCTCTCGTTTAAGGGCGCGGCTATCAAG
CATGCGTACGCCGGACTAGTTGGTGTTAGTACGGCGGATTGTGCTAGAGA
TCGCGCCCGCACAGATGTGGATGGGATATATGTGGGGGTGGGGGAGTGGT
GCTGGGTATGACGACGTGTAGAGGGGGTGGTGCGGTGTAGCGCACGCTGC
TGAGCCGGACTCAGTGTTGGTCACTAATGATCCCGCTAGAGGTCCGAGTT
GCAAGCAAACAGCGAAGGGGTTAGTTATGTTGTGGGAGAGGCGTGCGACC
ATGGGGTTGCGTGTGGTGGCGCAGGGTGGTGTGGTGCGTAGGGGGTGGTG
AGGGGATAACTTGGTGCGGGACGGGGATGGGAGAGAGTGGCGTGGTGTGT
GGTGGTGGTGAGGAGGGGCGTCGATAGACGATATGTCTATCTATTCGGAC
GAAAATTTGTGATGGCGAAAGATTTACGACTCTGGGCTGTTATGCTCTCC
ATGCTCGCGAAGAGAAGCGACGAAGGTAGTGCGGCGCGTTCGCTGGCAAG
TGGGTGATTGGTCAACATTACCGATCCACACAGAACAGATAATCGGAACA
CCCACTCCTCCTCTATGTAAGGTCCCGGCTGGCTCACTCGGTACAGATTG
GACGGCGGGCCCACAGTGTAGAAGTGTGAATAGATCCGTGTTCTCGTAGC
AGTGCGCAGTTTGCTCTGTGAGCGTCAGTGGGCGTGCGTCCGGGGCCCGA
GTGCGTCGACATGTGTGGTCGTGGGAGGTCTGTGCTAATATGGAAAGACC
GATGAGCCGTCGTTCTGTCTAAAACATACTCCAGTGATTAATGCGCCTCA
GTGCGATTCCGCTAATAATCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_i07.b1 MSMg01no466_i07.b1 CHROMAT_FILE:
MSMg01no466_i07.b1 PHD_FILE: MSMg01no466_i07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:02 2005
         (225 letters)



>mm_chr4_50174759_50175383
          Length = 625

 Score =  368 bits (190), Expect = e-106
 Identities = 216/225 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgcacagtgctcttctcaccccagctaggagagaggatcttttcttaatatattaaaa 60
           |||||||| |||| |||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 agtgcacaatgctattctcatcccagctaggagagaggatattttcttaatatattaaaa 260

                                                                       
Query: 61  ataaaataggaccaagtgaacttctaattttgtgatgcttctagggtatataacctactc 120
           |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 261 ataaaataggaccaagtgaacttccaattttgtgatgcttctaggatatataacctactc 320

                                                                       
Query: 121 accaatgcttttcaatgtgataactactaaaaaagaaggatgtgtgtgggccatgttcca 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 accaatgcttttcaatgtgataacaactaaaaaagaaggatgtgtgtgggccatgttcca 380

                                                        
Query: 181 ctttgtgntggcagacactgagtttatatagctccccttcattct 225
           ||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 381 ctttgtggtggcagacactgagtttatatagttccccttcattct 425


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 625
Length adjustment: 9
Effective length of query: 216
Effective length of database: 616
Effective search space:   133056
Effective search space used:   133056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)