MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-466K21
Chromosome	4 (Build37)
Map Location	153,249,520 - 153,249,750
singlet/doublet	singlet
Overlap gene	none
Upstream gene	LOC100042089, Ajap1
Downstream gene	BC039966, A430005L14Rik, Dffb, BC046331, Lrrc47, 1190007F08Rik, Ccdc27, Trp73, Wdr8, 1200015A19Rik, Megf6, Arhgef16, Prdm16, LOC100043342, LOC100042178, Actrt2, B230396O12Rik, Mmel1
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC100042089 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042089
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Ajap1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230959 MGI:2685419
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 ESTs, 1 Protein

name	BC039966 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:407793 MGI:3039570
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs

name	A430005L14Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:97159 MGI:2140680
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dffb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13368 MGI:1196287
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC046331 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230967 MGI:2687282
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lrrc47 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72946 MGI:1920196
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1190007F08Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68859 MGI:1916109
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccdc27 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381580 MGI:2685881
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Trp73 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22062 MGI:1336991
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Wdr8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:59002 MGI:1891749
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1200015A19Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67808 MGI:1915058
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Megf6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230971 MGI:1919351
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 mRNAs, 114 ESTs, 4 Proteins

name	Arhgef16 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230972 MGI:2446219
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 47 ESTs, 7 Proteins

name	Prdm16 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70673 MGI:1917923
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043342 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043342
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC100042178 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042178
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 12 ESTs

name	Actrt2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73353 MGI:1920603
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	B230396O12Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242800 MGI:2445205
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mmel1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27390 MGI:1351603
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ajap1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94372801 GeneID:230959 MGI:2685419
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 11 ESTs, 1 Protein product : adherens junction associated protein 1, transcript variant 1 transcript_id : XM_485506.4

name	BC039966 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149253335 GeneID:407793 MGI:3039570
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs product : cDNA sequence BC039966 transcript_id : XM_001477621.1

name	A430005L14Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802941 GeneID:97159 MGI:2140680
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA A430005L14 gene transcript_id : NM_175287.3

name	Dffb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802948 GeneID:13368 MGI:1196287
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DNA fragmentation factor, beta subunit transcript_id : NM_007859.3

name	BC046331 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31343602 GeneID:230967 MGI:2687282
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC046331 transcript_id : NM_177673.2

name	Lrrc47 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:41152115 GeneID:72946 MGI:1920196
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : leucine rich repeat containing 47 transcript_id : NM_201226.1

name	Ccdc27 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802895 GeneID:381580 MGI:2685881
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 27 transcript_id : NM_001033455.2

name	Trp73 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142375138 GeneID:22062 MGI:1336991
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transformation related protein 73 transcript_id : NM_011642.2

name	Wdr8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70778725 GeneID:59002 MGI:1891749
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : WD repeat domain 8 transcript_id : NM_021499.2

name	1200015A19Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71795665 GeneID:67808 MGI:1915058
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1200015A19 gene transcript_id : NM_026388.2

name	Megf6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94372857 GeneID:230971 MGI:1919351
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 mRNAs, 114 ESTs, 4 Proteins product : multiple EGF-like-domains 6, transcript variant 1 transcript_id : XM_620148.3

name	Arhgef16 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94372806 GeneID:230972 MGI:2446219
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 47 ESTs, 7 Proteins product : Rho guanine nucleotide exchange factor (GEF) 16, transcript variant 5 transcript_id : XM_902459.2

name	Prdm16 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124107622 GeneID:70673 MGI:1917923
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : PR domain containing 16 transcript_id : NM_027504.3

name	LOC100043342 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149253362 GeneID:100043342
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100043342 transcript_id : XM_001480354.1

name	LOC100042178 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149253337 GeneID:100042178
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 12 ESTs product : hypothetical protein LOC100042178 transcript_id : XM_001477690.1

name	Actrt2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31982618 GeneID:73353 MGI:1920603
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : actin-related protein T2 transcript_id : NM_028513.2

name	B230396O12Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:61098156 GeneID:242800 MGI:2445205
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA B230396O12 gene transcript_id : NM_172878.2

name	Mmel1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7305476 GeneID:27390 MGI:1351603
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : membrane metallo-endopeptidase-like 1 transcript_id : NM_013783.1

name	Ajap1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82895973 GeneID:230959 MGI:2685419
definition	codon_start : 1 product : adherens junction associated protein 1 isoform 1 protein_id : XP_485506.3

name	BC039966 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149253336 GeneID:407793 MGI:3039570
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477671.1

name	A430005L14Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30424952 CCDS:CCDS19003.1 GeneID:97159 MGI:2140680
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC97159 protein_id : NP_780496.1

name	Dffb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542553 CCDS:CCDS19004.1 GeneID:13368 MGI:1196287
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence ISS] [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004516 - nicotinate phosphoribosyltransferase activity [Evidence IDA]; GO:0004518 - nuclease activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006915 - apoptosis [Evidence IEA]; GO:0006309 - DNA fragmentation during apoptosis [Evidence ISS] codon_start : 1 exception : mismatches in translation note : DNase inhibited by DNA fragmentation factor; DNA fragmentation factor, 40 kD, beta subunit; caspase-activated DNase product : DNA fragmentation factor, beta subunit protein_id : NP_031885.2

name	BC046331 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29244100 CCDS:CCDS19005.1 GeneID:230967 MGI:2687282
definition	GO_function : GO:0005488 - binding [Evidence IEA]; GO:0016595 - glutamate binding [Evidence ISS]; GO:0016594 - glycine binding [Evidence ISS]; GO:0016596 - thienylcyclohexylpiperidine binding [Evidence ISS] codon_start : 1 note : likely ortholog of H. sapiens glycine-, glutamate-, thienylcyclohexylpiperidine-binding protein product : glycine-, glutamate-, thienylcyclohexylpiperidine-binding protein protein_id : NP_808341.1

name	Lrrc47 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:41152116 CCDS:CCDS19006.1 GeneID:72946 MGI:1920196
definition	GO_function : GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 note : novel protein containing Leucine Rich Repeat domains product : leucine rich repeat containing 47 protein_id : NP_957678.1

name	Ccdc27 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701967 CCDS:CCDS19008.1 GeneID:381580 MGI:2685881
definition	codon_start : 1 product : coiled-coil domain containing 27 protein_id : NP_001028627.1

name	Trp73 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30794514 CCDS:CCDS19009.1 GeneID:22062 MGI:1336991
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence TAS]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence TAS]; GO:0030900 - forebrain development [Evidence IMP]; GO:0043066 - negative regulation of apoptosis [Evidence IDA]; GO:0042981 - regulation of apoptosis [Evidence TAS]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 product : transformation related protein 73 protein_id : NP_035772.1

name	Wdr8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70778726 CCDS:CCDS19010.1 GeneID:59002 MGI:1891749
definition	codon_start : 1 product : WD repeat domain 8 protein_id : NP_067474.2

name	1200015A19Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312776 CCDS:CCDS19011.1 GeneID:67808 MGI:1915058
definition	GO_function : GO:0042802 - identical protein binding [Evidence IPI]; GO:0005515 - protein binding [Evidence IPI] codon_start : 1 product : hypothetical protein LOC67808 protein_id : NP_080664.1

name	Megf6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82895993 GeneID:230971 MGI:1919351
definition	codon_start : 1 product : EGF-like-domain, multiple 3 isoform 1 protein_id : XP_620148.2

name	Arhgef16 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94372807 GeneID:230972 MGI:2446219
definition	codon_start : 1 product : hypothetical protein isoform 5 protein_id : XP_907552.2

name	Prdm16 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124107623 GeneID:70673 MGI:1917923
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : transcription factor MEL1 protein_id : NP_081780.3

name	LOC100043342 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149253363 GeneID:100043342
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480404.1

name	LOC100042178 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149253338 GeneID:100042178
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477740.1

name	Actrt2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13386316 CCDS:CCDS19014.1 GeneID:73353 MGI:1920603
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IEA]; GO:0005198 - structural molecule activity [Evidence IEA] codon_start : 1 note : actin related protein M2 (Arpm2) product : actin related protein M2 protein_id : NP_082789.1

name	B230396O12Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:61098157 CCDS:CCDS19015.1 GeneID:242800 MGI:2445205
definition	GO_function : GO:0005488 - binding [Evidence IEA] codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC242800 protein_id : NP_766466.2

name	Mmel1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305477 GeneID:27390 MGI:1351603
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IDA]; GO:0005615 - extracellular space [Evidence TAS]; GO:0005794 - Golgi apparatus [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence ISS]; GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0004245 - neprilysin activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA] GO_process : GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy note : neprilysin 2; NEPLP beta; NEPLP alpha; NEPLP gamma; soluble secreted endopeptidase product : mel transforming oncogene-like 1 protein_id : NP_038811.1

name	LOC100042089 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042089
definition	number : 1 pseudo : _no_value

name	LOC100042089 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042089
definition	number : 2 pseudo : _no_value

name	1190007F08Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149253303 GeneID:68859 MGI:1916109
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1190007F08 gene transcript_id : XR_035126.1

clone name	MSMg01-472K04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-062O18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-491D11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-477I21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-526K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-082O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-094N04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-359M19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-141I16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-304H15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080G07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-547G20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-331E17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-349J16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-480M09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-342G13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-362I03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-072A13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-155H16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-272C01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-276I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-349I20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-495A23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-109I16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-301I06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-300K04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-456K06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-070B17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-524A12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-214K09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-189A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-214J09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-410A23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-180E10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-146K23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-353N13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-395O23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-411A01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-102G13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-496B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-493J09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-466K21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-214B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-363L07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-412O21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-418K17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-111M17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-360B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-466G19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-145C24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-494A11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-196M16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-409C24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-486J15
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-086D01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-301P15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-433C23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-386H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-502B01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-065B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-116K05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-315E16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-274F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-178P18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-355N16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-089F04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-288L10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-339N18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-407G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-317N07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-140N06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-449O22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464P19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-206J20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-383E14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-373B04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-540B17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-541A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332C17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027B06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012B18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-060N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219L13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216H09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-020F23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-194A12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062F01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-184B03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-260N10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321F23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176P21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-020K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224G11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192P18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173G12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-226D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078F05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-089B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087J04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317G14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232K06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062E22
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-466K21.T7 (MSMg01no466_k21.b1)	MSMg01-466K21.TJ (MSMg01no466_k21.g1)
ACC	AG550569	AG550570
length	778	841
length of high quality (start - end)	235 (84 - 318)	35 (80 - 114)
definition	CHROMAT_FILE: MSMg01no466_k21.b1 PHD_FILE: MSMg01no466_k21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:15 2005	CHROMAT_FILE: MSMg01no466_k21.g1 PHD_FILE: MSMg01no466_k21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:15 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	TTTCTCTTATATTTGCGGCGCTAAACGAGGCACATAATCAACACTCGGCG GAATTCTCAGNTCTAACCGCAAATGTCTGNCTGGATGCTGCCATGTTCCC ACCTCAATGATAATGGATTGAACCTCTGACCCTGTAAGCCAGCCCCAGTG AAATGTTGTCCTTATAAGGTTGCCTTGGTTATGGTGTCTCTTCACAGCAC CCTAACTGAGACAACTGTTGTTAGGATATAAAGGTTTACAAATCAATTAT TTTTTAAAAACAGGCATAGTGATACATGCCTGTCATCAGGATCACTGCAA TTTGATGACCCTCCTTCCTGCTTTAACCAGTGAGTTCCAAGTTCAGTGGT AGACCCTGTCTTAGCACAGGTTTCTACAGCCGTGATGAAGCACCATGACC AATATCCACTTGGAAGAACACCGTGTTTATTTCAGCTGGCATGTGTTGTC TGTCATCCATGGAAATCCGATTATGTTATTCTTGGTTTTAACCTAAAGGC TTAATCCCATATTTGTTTACCAGTTTCTCCTAATGATTTTGACCTCTTGG GTTTTCCTTAATGTTTCCCTCAATTGTTGAAATCTAATTATCCCTCTTTT TTATATTCTCTCTTTTCCATGTTTTTTTACTTTCCTCTTTCTTTTCTTCA TTTTTTTTTTTTTTTTTCTCATCTCTCCCCTCCTTTTTTTTCTTCCCTTC TTTCTTCCACCTCCCCTCTTATTTTTTCTCCTCCTCTTCCTCCCTCGTTT TCTTCTTTTATCCCCTTTTTTTTTTTTN	TATTTCCATGCAATGTTTATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTAGGTCCAGATATTCCCTGG CCACAGGTAGGGGACAAGGGTCCTGGCGTGATGAAGAGTGACACACTATC CTCCATCATCCTAACACACCATCCCATATAGCAATCCCCAACTTATTTAC TCTATCTACACCAAAACCCACATACATTAAATCATACTTTATAATATCTT TCCTTCCTTTTTATACCATATATCCTTACCTTAAATCATTTTTCTCTTCT TATTACTTCTACTCTTCCCCTAACCAAACCTTTTTTTTTTAGACAAATAA TCCTTATATTAATTTTTCACTTTAATCACTTTTTAACTTCTCTTTTTTTT TCTTATTTATTTTCTTTCTTCTCACTCCCCCATTTATCCCCCCCACCTAT CCCAATCCACTAATATATTCTATATATCCTTTTTTACAACTACTTTATCC ATCACCACACCCCCATTTACATCTCTTTTCATCCCCCCCTTTTCACCATT TCTCTTATATCATCCCCAAAACCCCTCTCTAAACATATATCCCATCCCCA TCCACCTCATATATCATCTATTATCTCAACCCTTCTCTATAATTCTTTTC ACCACCTCCCAATTATCCATAAATAATCCATTACCCCTCCACTACCCCAT ACCCCCACCCCTTACTTCCCACACCCCTTACCCTATTCTCACTATACTTA CCCTCATTACCCATCAAATTATTAACCCATTATCCATTTCTCTATATCTC ACTTCCCATTTTAATTACACATACTACAACACATATACAAG
quality values	Open. Hide. 15 17 19 10 8 6 8 8 8 8 8 9 9 22 10 9 9 9 23 22 22 17 16 16 9 11 11 12 8 8 8 8 8 10 6 6 6 6 6 6 6 8 8 8 8 9 9 9 9 9 16 11 15 16 23 22 18 15 17 3 0 3 9 6 6 6 6 7 7 9 10 13 13 16 12 15 20 20 3 0 3 29 19 23 20 28 28 28 46 33 36 36 38 36 36 59 59 42 34 34 34 34 34 39 36 30 30 30 39 39 50 37 27 25 8 8 6 6 6 13 15 24 24 33 33 40 37 37 39 39 39 43 59 59 57 47 43 43 43 43 44 50 48 48 48 48 48 48 48 57 47 47 47 47 42 41 43 43 39 39 43 48 57 57 44 42 35 35 37 39 43 46 48 54 59 57 47 57 47 57 57 57 57 68 68 57 57 57 59 59 59 59 47 47 47 57 57 40 43 44 59 59 59 48 48 48 44 43 35 35 35 43 43 57 57 59 57 57 57 59 59 57 57 54 54 54 57 57 57 57 50 50 47 47 47 57 47 57 43 43 43 42 47 39 35 35 25 25 10 12 12 27 34 59 59 48 48 48 48 57 57 39 39 35 48 47 59 57 57 50 50 46 48 47 47 48 48 48 48 57 57 42 47 39 41 41 36 28 28 32 37 43 57 57 57 57 48 48 48 59 59 59 59 59 59 43 47 41 41 37 30 25 24 13 11 9 9 9 9 9 9 10 11 11 11 15 25 28 41 34 34 28 28 28 35 59 59 59 59 57 48 48 48 48 37 32 24 20 20 20 20 25 23 15 12 18 12 12 8 8 8 10 8 10 10 10 10 10 12 16 28 32 39 41 39 37 37 37 30 37 30 39 37 43 43 48 40 40 28 28 20 24 24 28 28 25 36 25 30 24 28 20 20 20 28 31 30 31 31 20 21 13 12 11 14 11 10 10 8 8 8 8 8 12 13 21 20 24 29 28 28 24 18 11 11 19 17 16 12 10 10 13 13 10 10 19 21 20 18 21 13 13 13 15 15 15 12 8 8 8 8 8 11 10 10 12 18 12 13 12 19 12 9 9 10 14 10 10 16 19 19 18 10 10 10 10 8 8 8 8 8 8 10 10 11 11 11 8 8 8 8 8 8 9 9 10 10 10 8 10 8 8 8 10 11 11 10 12 8 8 8 8 9 9 8 8 8 8 8 10 12 9 8 8 8 8 8 15 17 10 7 7 7 13 14 16 11 11 9 9 9 9 12 10 8 8 8 8 10 8 10 10 10 10 21 19 15 10 9 9 8 8 8 9 10 11 11 12 12 11 9 9 9 9 8 8 6 6 8 8 9 9 8 11 6 6 6 8 10 10 9 10 8 8 8 8 8 8 13 10 8 8 9 14 14 8 8 8 8 8 8 8 19 19 19 19 15 10 14 9 8 8 8 8 8 15 14 15 14 12 10 10 9 9 10 10 9 13 10 10 9 12 17 14 10 10 9 9 12 12 21 25 37 34 21 12 10 10 10 8 8 8 8 8 8 9 9 9 12 12 9 9 9 9 8 10 14 14 14 16 10 10 8 8 8 8 9 11 12 16 13 10 9 9 9 8 8 8 8 8 13 8 9 8 8 10 10 10 8 8 8 8 8 8 22 12 8 8 8 8 8 8 8 8 12 10 11 11 13 10 9 9 10 10 8 8 8 8 13 9 9 8 8 8 8 9 9 9 8 8 11 12 11 11 15 11 18 19 19 16 11 11 15 14 8 8 3 0	Open. Hide. 12 15 15 21 9 9 11 11 9 9 9 9 9 9 9 8 8 8 8 8 8 10 15 11 15 19 19 20 20 28 34 37 37 23 23 9 9 9 11 12 13 11 11 11 11 11 11 12 13 20 16 13 10 10 11 26 26 30 28 12 11 11 11 10 9 9 10 10 11 14 11 9 7 8 8 8 9 15 20 19 22 24 30 30 25 23 22 19 28 28 37 39 47 47 50 59 34 34 23 14 19 24 29 37 28 33 33 28 28 19 15 15 14 14 26 26 23 19 11 8 8 8 10 15 14 9 9 10 14 11 11 11 11 8 8 8 8 8 11 9 8 8 8 8 8 8 8 8 8 16 12 16 13 12 8 10 8 8 8 8 8 8 11 10 10 8 8 6 6 8 8 10 11 12 11 13 11 11 11 11 11 9 8 8 8 8 8 8 8 8 8 10 12 12 9 9 11 10 8 8 8 8 10 10 8 8 8 10 6 6 8 8 8 9 10 7 6 8 8 9 10 10 10 10 10 10 10 12 10 10 10 9 9 9 9 9 9 9 8 8 8 8 8 8 8 8 8 6 6 10 10 8 8 8 10 11 10 9 9 9 9 8 10 10 10 8 11 10 8 8 8 8 8 16 18 14 13 10 8 8 8 8 8 8 8 10 8 8 8 8 8 10 8 10 8 8 9 9 8 8 8 8 8 9 10 10 8 8 8 8 8 8 8 8 8 8 8 8 10 8 8 8 8 8 8 8 10 12 12 12 11 15 15 22 27 30 25 13 10 10 8 8 8 9 9 8 8 8 8 8 10 8 9 9 8 8 8 8 10 10 10 10 15 13 10 11 10 10 12 11 8 8 8 8 10 10 11 11 11 10 8 6 6 6 6 8 8 8 8 8 8 8 10 10 8 10 10 14 19 17 25 12 12 11 13 8 10 6 6 8 8 12 12 12 8 8 7 6 8 8 6 8 8 6 6 6 6 10 7 8 8 8 10 8 7 8 8 8 8 8 8 8 7 8 6 6 8 8 6 6 8 8 6 6 8 8 8 6 6 8 8 10 10 8 8 8 10 9 8 8 6 6 8 6 6 8 8 8 8 10 8 6 8 8 9 9 8 8 8 8 8 6 10 13 10 10 10 9 9 8 8 8 8 9 8 8 6 6 8 8 11 10 8 8 12 11 11 8 8 8 8 8 8 8 8 8 9 12 8 8 7 7 7 9 12 14 10 9 9 9 9 8 8 8 8 8 6 6 8 8 9 9 8 11 9 9 9 15 10 9 12 15 10 9 9 9 8 8 8 8 10 10 11 11 17 17 13 12 11 11 8 8 6 6 6 10 10 8 8 8 9 8 8 8 8 8 8 10 8 10 8 8 8 8 8 8 8 8 8 8 8 8 8 9 8 8 6 8 7 9 10 10 10 10 10 10 10 10 11 13 16 11 11 9 9 9 10 10 10 10 11 8 8 8 8 8 8 8 8 8 8 8 8 8 11 18 11 11 12 12 11 10 8 8 8 8 9 9 12 12 10 10 10 8 8 10 9 10 8 7 7 8 8 11 12 16 14 12 12 11 10 10 10 15 10 10 8 8 8 10 11 10 8 8 8 9 9 9 8 8 10 8 8 8 11 11 11 12 11 11 8 6 6 6 8 10 8 10 8 8 9 9 8 8 6 6 8 8 9 9 9 9 9 9 9 10 8 8 7 7 8 6 8 8 6 8 8 10 8 10 8 11 10 10 8 8 12 12 8 8 9 9 8 8 8 8 8 8 8 8 8 8 8 8 10 13 13 13 9 9 9 12 9 10 11 12 12 11 12 12 10 10 9 9 8 8 9 9 10 9 10 10 10 10 10 10 12 10 8 8 8 8 8 8 8 8 6 8 6 6 8 8 14 12 8 9 9 10 10 9 9

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no466_k21.b1 MSMg01no466_k21.b1 CHROMAT_FILE:
MSMg01no466_k21.b1 PHD_FILE: MSMg01no466_k21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:15 2005
         (235 letters)



>mm_chr4_153249320_153249954
          Length = 635

 Score =  424 bits (219), Expect = e-123
 Identities = 228/231 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatgctgccatgttcccacctcaatgataatggattgaacctctgaccctgtaagccagc 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 gatgctgccatgttcccacctcaatgataatggactgaacctctgaccctgtaagccagc 260

                                                                       
Query: 61  cccagtgaaatgttgtccttataaggttgccttggttatggtgtctcttcacagcaccct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccagtgaaatgttgtccttataaggttgccttggttatggtgtctcttcacagcaccct 320

                                                                       
Query: 121 aactgagacaactgttgttaggatataaaggtttacaaatcaattattttttaaaaacag 180
           ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 321 aactgagacaactgttgttaggatataaaggtttacagatcaattaatttttaaaaacag 380

                                                              
Query: 181 gcatagtgatacatgcctgtcatcaggatcactgcaatttgatgaccctcc 231
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcatagtgatacatgcctgtcatcaggatcactgcaatttgatgaccctcc 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information