BAC Information

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BAC

Clone NameMSMg01-466L02
Chromosome4 (Build37)
Map Location 48,120,529 - 48,120,651
singlet/doubletsinglet
Overlap genenone
Upstream geneGalnt12, Col15a1, Tgfbr1, LOC666236, LOC666473, Alg2, Sec61b, LOC100040788, Nr4a3
Downstream geneStx17, Txndc4, Invs, Tex10, 5730528L13Rik, Tmeff1, 2310039E09Rik, E130309F12Rik
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466L02.T7 (MSMg01no466_l02.b1)MSMg01-466L02.TJ (MSMg01no466_l02.g1)
ACCAG550579AG550580
length841806
length of high quality
(start - end)
126 (50 - 175)322 (81 - 402)
definitionCHROMAT_FILE: MSMg01no466_l02.b1 PHD_FILE: MSMg01no466_l02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:16 2005CHROMAT_FILE: MSMg01no466_l02.g1 PHD_FILE: MSMg01no466_l02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTTCATGTCTCTCAACAGCTAAAACAAATGCAGAGTCATA
GAAGTCCTGCTCTGTTTGCGAGCCTAATAGCACAGCATTTCTTTGGAAGA
TCAGTTGGGATGGGTTAGGGGTGTACACCTATACTCCTATGTCTCAAGAA
GCGGGAGCGGGACGGTCATAACTTCTAGGACTACACTGTAAGATCCTGTC
TCATGTATCTACGACATCGAGATTATACTCATCCATTTAATCTGTCTCAT
ACTTGACTCTAAAAAATTTTTTTTTTATCCATTGCAATACGCACCTCCTA
TGTTTGTAACTTTAGTATCTGTGCCACGCTGAGAGCCGCTCCCAGCGACA
CCTACGCTATTCGCTTCGTCTGACTTTACCCATTCTTATACCTTTGTGGT
GATGGCCCCCCTCTCCCCTTTCTTTTTTTCTTTCCGACCGCTTTTACTTT
CTCCTCACCGCACGCGATATATTGTATAATTCTTTATTTTCCTTCCTCTT
CTCTTCCCCATCCCCCTTTCCTTTCCTTATTCCCCGCTTGTCACTTCGTC
CTTTCACCGTTTTTCTCACTATCTTTCCCTTAATTCTCTTCCTATCCTTT
TGTTTCCCCCCCCCCCCCTAATTTTTTTTCTTTATCCCTCTTCCCCTACG
CGCTTTCTCTATCCCTATATTTCCCTTACGCCCTCTCCTTATTAATCTTT
TTTCCCCCCCATTTTTTTTCTTTAATCCCTCTTACCTCCCCCATTCACCT
CACTCCCCTTGTCTCCCCCCTTCTTCTTTTTCCTCCCTTGN
CCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTATATAGAAGGCTGGCCT
CAGACTTGCAGGGATACATCTGCCTCTGCCTCTTGAGTGCTGGGATTAAT
AAATGGACCAATATGTCCAACTCCATAGCAGCTTTTTTTCAAGGATTCTA
TGAATCAAACTCAGGTCCTCAGGCTTGTGTACCAGGTACGTACTGTACTT
AACTGTCTCTCCAGCCCAAATAGCATATTTCTAAGATCACAGATTTAAGT
GGGATAAACAACATTTGAAAAGAAGTTTGCTAAATGAAAGGAAAGGAAAG
GAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAGC
TTAATGGCTATTTATCTTATTGGCCCCATCTTTTGTTTATTTGCCCACTA
CATCACTACATTTATCTCAACCCGTATTTTCTTTTTTACTTTTTACTCAC
GCTATGGTGTCCTAATAAGTTACCTCTATTCCTCAATATAATTGCCCCAA
TTTTTCTTACTACTATTCTCTCCCCATAATCAATCAACCTTTTCTTTTCC
TGCTTCTTCTCCCCTTATTATCATTTCTATATCTACTTTCGACACATGAT
TTACGCCTATCCCACTTTCCTATTTATTATCTTATAACCATCTTCTCCCC
TTCGCTACCTTACATCATTTGCTTTCTTTCCTTTATTTATCTCATTAATA
CTCTTTTTATATATTATGAACTCACCCCCTTGCCTCTTCCTACTTCACCT
CTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_l02.b1 MSMg01no466_l02.b1 CHROMAT_FILE:
MSMg01no466_l02.b1 PHD_FILE: MSMg01no466_l02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:16 2005
         (126 letters)



>mm_chr4_48120326_48120851
          Length = 526

 Score =  207 bits (107), Expect = 2e-58
 Identities = 119/123 (96%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttttcatgtctctcaacagctaaaacaaatgcagagtcatagaagtcctgctc 63
           |||||||||||||  || |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 204 ggaattcttttcacatccctcaacagctaaaataaatgcagagtcatagaagtcctgctc 263

                                                                       
Query: 64  tgtttgcgagcctaatagcacagcatttctttggaagatcagttgggatgggttaggggt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgtttgcgagcctaatagcacagcatttctttggaagatcagttgggatgggttaggggt 323

              
Query: 124 gta 126
           |||
Sbjct: 324 gta 326


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 126
Length of database: 526
Length adjustment: 8
Effective length of query: 118
Effective length of database: 518
Effective search space:    61124
Effective search space used:    61124
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)