BAC Information

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BAC

Clone NameMSMg01-466P02
Chromosome4 (Build37)
Map Location 28,240,050 - 28,240,468
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040691, Tpm3-rs2, LOC100040842, LOC100040735
Downstream geneLOC230044, LOC665141, LOC100040773, Epha7, LOC100040907, LOC100040811
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466P02.T7 (MSMg01no466_p02.b1)MSMg01-466P02.TJ (MSMg01no466_p02.g1)
ACCAG550771AG550772
length783876
length of high quality
(start - end)
419 (68 - 486)81 (73 - 153)
definitionCHROMAT_FILE: MSMg01no466_p02.b1 PHD_FILE: MSMg01no466_p02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:38 2005CHROMAT_FILE: MSMg01no466_p02.g1 PHD_FILE: MSMg01no466_p02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATTATTTGCGGCCGCCAAACGACGCACTAATGCGAGAGAGACCGCGG
AATTCTCATTCTTTCACCAATACAAGAAATAACATAATTTTCAGATGAAG
CACTATGTATCTTTATTCAATACTGTCTATTTTATTATAATCCAGACTAT
GATTTAGGCACTTAAAGTCACACTATTGAAAGAAGCTGGGAATTTTTTTT
CTTTACTGTGTGTTCACAATAAAAAGAAAGTGAGCTTAGAGACAATATTT
TGCATAACAATAATGTAGTAATCATAAAAGCAAACTTTGAAATTAAAAGG
GTAAACATCAAGTCACTTCTCATTTCTTCTTTATAAAGCTTAAACTCAAT
ATACCACAGTTTTCTCGTTTTCTAAGTAAGGATAATAATATTTAGTATAA
ATATTACTATGCATGCTATGAAAAATATCTTCATGGAGCTTAGCATAGGA
TTTGATTTTGTGCTTGTAAGAATAATTATCTCTAAGGGTCACACAAGTAT
ATACCTAATTATTGATATACCGCGACCTACCTATTCTCAAAGCTTCAATT
TCCCATACTACTTCATAACTTCCTTTTTGTTCATTTCCAAAATTCTCTTT
AGAATATATTTTTGCCCCCCGACGGTTTTTTTTGGATTAACGAGTTCCGT
CCCCTACCCTAAACCCCCTAACCCCCTTTGACTCTCTACTTTCCCTTATT
GCTCCTACTTTTAGTGTTTTTCCGTTTCCTCCTCCCTTTATACCTCACTC
CTTTTGTTTTACTCTTTTGTTTATTATCACCGC
CAATGCTGTGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCAGTTTAATTCTATACCCCACTTTTTG
ATTGGGTTGTTTGGTTTGTTGGTGATTAATTTCTTGAGTACTTTATATAT
TTTGGTTATTACCCCTCAACGGAATGCGTCGCTAGGGATGAATTTTTTCC
CCATCTGGTCTTTGTTGTAGCCGCCGCCTCGCCCTTGTCCCTTGGCTTTC
TGGCCCCCCTCCCACCCTCCCCGGTGTCCGACTTGCCCCCTCCGTGACCG
TTCCACCCCCGCCCCCCCCTTTCTTTTTCTTTGTCTGTCTCGTAGCCTGT
TATCCCCCGTCTTCCCCTACTTTTGCTGACTCGCCTCTCCCCCCCTTTGC
TTTCGCCTTCCCTCTTCGCCCTCTTCTCTCTGTTTTCCTCACTACTAATG
GCGGCCTCTTTCTCTTTTTTTTTTTCCGCCCGTCCCCCCCCCTCTATTTT
ATTCCTCCCCTCCCCTCTTTTTCTGACTTCTTTCCTTACCCTCCTCCCCG
CTTTCCTTCCCCTTTCTTCTATCCCCCTTTTCCCTCTCCATCCCTTCGCC
CCCCCCTTCTCTTTCCTACCCCTATACATTTCCCCCGCGTATACTTTTAC
CCCAATATTTCTCCCCCCACATCCCCTCTCCTTTTCCTTCTATTCTTCTT
CTCCTCCTCCGCTCCTTCCTTTTCCTATTCTATTCCATCCTTTTTAATGT
TCTATATAATCTACCTTCCCCCCCCCACTTTCCTCCTTCTCCCCCCCTCT
CCTCCTCTCTTTACCGCCCACCCCCTCTTCTCCCCTTCTTTTTACTCCCC
CCTCCCTCCCCTCTCCTCCCCCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_p02.b1 MSMg01no466_p02.b1 CHROMAT_FILE:
MSMg01no466_p02.b1 PHD_FILE: MSMg01no466_p02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:38 2005
         (419 letters)



>mm_chr4_28239850_28240668
          Length = 819

 Score =  748 bits (387), Expect = 0.0
 Identities = 412/421 (97%), Gaps = 4/421 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatacaagaaataacataattttcagatgaagcactatgtatctttattcaatactgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caatacaagaaataacataattttcagatgaagcactatgtatctttattcaatactgtc 260

                                                                       
Query: 61  tattttattataatccagactatgatttaggcacttaaagtcacactattgaaagaagct 120
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 261 tattttattataatccagactatgatttaggcacttaaagtaacactattgaaagatgct 320

                                                                       
Query: 121 gggaattttttttcttt--actgtgtgttcacaataaaaagaaagtgagcttagagacaa 178
           |||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggaattttttt-ctttccactgtgtgttcacaataaaaagaaagtgagcttagagacaa 379

                                                                       
Query: 179 tattttgcataacaataatgtagtaatcataaaagcaaactttgaaattaaaagggtaaa 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tattttgcataacaataatgtagtaatcataaaagcaaactttgaaattaaaagggtaaa 439

                                                                       
Query: 239 catcaagtcacttctcatttcttctttataaagcttaaactcaatataccacagttttct 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 catcaagtcacttctcatttcttctttataaagcttaaactcaatataccacagttttct 499

                                                                       
Query: 299 cgttttctaagtaaggataataatatttagtataaatattactatgcatgctatgaaaaa 358
            ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| 
Sbjct: 500 tgttttctaagtaaggataataatatttagtataaatattactatgtatgctatgaaaa- 558

                                                                       
Query: 359 tatcttcatggagcttagcataggatttgattttgtgcttgtaagaataattatctctaa 418
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tatctgcatggagcttagcataggatttgattttgtgcttgtaagaataattatctctaa 618

            
Query: 419 g 419
           |
Sbjct: 619 g 619


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)