Query= MSMg01no467_i16.b1 MSMg01no467_i16.b1 CHROMAT_FILE:
MSMg01no467_i16.b1 PHD_FILE: MSMg01no467_i16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:27 2005
(467 letters)
>mm_chr4_131686579_131687451
Length = 873
Score = 447 bits (231), Expect = e-130
Identities = 297/337 (88%), Gaps = 32/337 (9%)
Strand = Plus / Minus
Query: 138 taaaacttgccatgtagaacaggataccctcaaactcctcctggctttatctaaccctgt 197
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 873 taaaacttgccatttagaacaggatagcctcaaactcctcctggctttatctaaccctgt 814
Query: 198 tcactttttgtttgtttgtttgtttgtttgtttgtttgtttgtttttcttgacagggttt 257
|||||| |||||||||||||||||| ||||||||||
Sbjct: 813 tcactt------------------------tttgtttgtttgtttttcgagacagggttt 778
Query: 258 ctctgtatagccctggctgtcctggtacttaaaagaggcaggaaatccgcctgcctctgc 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 ctctgtatagccctggctgtcctggtacttaaaagaggcaggaaatccgcctgcctctgc 718
Query: 318 ctcccgagtgctgaaattaaaggcgtgcaccaccacgcccagctccctgttcacttctta 377
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 717 ctctcgagtgctgaaattaaaggcgtgcgccaccacgcccagctccctgttcacttctta 658
Query: 378 aagct-ct-----aacaccatatctggttgtttccct-ttactacatcactcactatggg 430
||||| || |||||| ||||||||||||| ||| ||||||||||||||||| ||||
Sbjct: 657 aagctccttccccaacaccgtatctggttgttt-cctcttactacatcactcactgtggg 599
Query: 431 aactctgagatcccttcaaacgataggagagacatag 467
|||||||||||||||||||||||||||||||||||||
Sbjct: 598 aactctgagatcccttcaaacgataggagagacatag 562
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 873
Length adjustment: 10
Effective length of query: 457
Effective length of database: 863
Effective search space: 394391
Effective search space used: 394391
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no467_i16.g1 MSMg01no467_i16.g1 CHROMAT_FILE:
MSMg01no467_i16.g1 PHD_FILE: MSMg01no467_i16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:27 2005
(458 letters)
>mm_chr4_131479891_131480748
Length = 858
Score = 878 bits (454), Expect = 0.0
Identities = 457/458 (99%)
Strand = Plus / Plus
Query: 1 tggtccaatttccagacagaggcggcagcagagggacagagttcaggtaccccaggtctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggtccaatttccagacagaggcggcagcagagggacagagttcaggtaccccaggtctg 260
Query: 61 aggtcctgatggggatggcacgatgcccagtgggcaggctcctcctgctcctcctcttca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtcctgatggggatggcacgatgcccagtgggcaggctcctcctgctcctcctcttca 320
Query: 121 gagctggtgtagcttgagcccatgctaatccaacccctacagcccagccttctctggctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagctggtgtagcttgagcccatgctaatccaacccctacagcccagccttctctggctc 380
Query: 181 agttccagtctgcaattcacttctgagaatggaacccaagcccatttctctcccacctgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agttccagtctgcaattcacttctgagaatggaacccaagcccatttctctcccacctgg 440
Query: 241 gctccccctctgtaaagcaaactgccactggtaacagtatcactaaaagaaaatgcacac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctccccctctgtaaagcaaactgccactggtaacagtatcactaaaagaaaatgcacac 500
Query: 301 tcaaaaccagtcaaaggtgctgaatttgtatagagcattcagcaggggaggccagaggct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 tcaaaaccagtcaaaggtgctgaatttgtatagagcattcagcaggggaggccggaggct 560
Query: 361 gccgtggcttcccactttgctcttgcttactccccttcagcccccagccacggctgacag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gccgtggcttcccactttgctcttgcttactccccttcagcccccagccacggctgacag 620
Query: 421 tgagcctctgtcaagcctcatgaagctcattccagcct 458
||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgagcctctgtcaagcctcatgaagctcattccagcct 658
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space: 379904
Effective search space used: 379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
