BAC Information

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BAC

Clone NameMSMg01-467K03
Chromosome4 (Build37)
Map Location 34,807,520 - 34,807,796
singlet/doubletsinglet
Overlap geneZfp292
Upstream geneLOC100041919, LOC100041924, Cnr1, Spaca1, LOC100039220, LOC665361, LOC665367, 2700059D21Rik, Orc3l, Rars2, Slc35a1, 1700003M02Rik, Gm136, 1810030N24Rik
Downstream geneCga, Mobkl2b, Ifnk, 3110043O21Rik, LOC620559, LOC621227, Lingo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467K03.T7 (MSMg01no467_k03.b1)MSMg01-467K03.TJ (MSMg01no467_k03.g1)
ACCAG551294AG551295
length740800
length of high quality
(start - end)
281 (325 - 605)160 (75 - 234)
definitionCHROMAT_FILE: MSMg01no467_k03.b1 PHD_FILE: MSMg01no467_k03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:34 2005CHROMAT_FILE: MSMg01no467_k03.g1 PHD_FILE: MSMg01no467_k03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCACAAATCCGCGGAAT
TCAGAATAAATTTCCGAGTACCCATAGATCCAAACTGTAACTGTCTTGAC
GTGTATGAAGATAAACTAAAGAGACACTTGTGCCCCTCCTATCAACTCTC
AGACTACTGACATAACAGACCCCACAAAATTGGAATTTCTTATGCTGTGA
GAAGGAAATGCTTGGCACCCTGCTACCAACAGAAAGAGGAGCTTGTCTGG
TGGACAGATCTCCACACAGCTCTGAGAACTTGTCAGACCATGATGGAGAG
AGACACAATGATGTCTCTTTATTGTGATGGGGGAGAAGATCACACTTTAA
CCAGGAATGCCTATTTATGCATTCCCTTTCTCTCTATTTAAATCCAAGCC
TTATGTCCTAAAGAAGGACTTGAGAGCATAACTTGTATGCTCTCTTTGTT
GTTCTTTCCAATGCAGACCCACTGAATAAATCTTCTTTCTCTAGTCACCA
TTATTTGTCTAACTGGGCTATAGGATGGGTAGCTGCCCCTCACTTGTTAA
GAGTTGTCAAAGATCAGGCTCTGACCCTACCAACTCTGGTATCAAAAGTT
TTGATAGCATAAAAATAACCCGTATTTGTAAGCTGAAGATTACGCTTTTT
TAGAGAGAAATGTACTGATGTGCGGCTTAAACCATCATTCCTGCTAGGTT
TTAGATTCATTGTTCTATCTCCTTTTCAGTGTCCGGGTTG
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTACTAATGAAAGACTCCAAAAGGA
GCCCCTCGCTCAGGCCTCAGGACAATAGCGGACACCCAAGAACTCACGAT
AGACCGAGCTTGTTGCAAACCACGTCAGGCTTTATTGGAGGGGGGGGGAG
CCAGAGCTCTGGGAATGACTCATATCCCACGCANGGGNGNTAGNAAGGNA
AGTCCGAACCCTCCGAGGGGGAAAAAGGTCCCCAGGTTTTTATATAANNN
NNNNNNNTTNNNTTTTNNTTTTTNTTTTTGTTTTTTTTTTTTTTTTTTTT
CTCCNNNNNTTTTCTNTCTTCTTTCTCTCCCCTCTTCTTCCCCTCTCTTC
CTTCTCCCTCCCTTTTCCTTCTCTTCTCTCTCCCCTCCCCCCTCCCCTTC
TCTTCCCTTTTTTCCTCCCTCTCTTCTTTCTTTTTTTTTCCTCCTCCCCT
TTTTCTCCTCTTCTTCTTTTCCTCTCTTTCCTCTCTTTCCTCCTTTCCTT
CCCCCCTTCTCTCTTTTTCCTCCTTTCTCCTCTTTTTTCTTTCTTCTCTC
TCCCTCTTCTTCCCCTCTTTTTCCCCTCCTTTCCTCCTCTTTCCTCTTCC
CTTCCCTCTTTTATTTTCTTCTTCCCCCTCTTTCCTCCCCTTTCTCTTTT
CTTCTTTGTCCTCCTCTTCTTCNTCCCTTTTTTTCTCCCTTCGTNTCTTC
TCCCCTCCCTTTTCTCCCTTTTCATGTTCTCGGTTCCTCGTTTCCGCCTN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_k03.b1 MSMg01no467_k03.b1 CHROMAT_FILE:
MSMg01no467_k03.b1 PHD_FILE: MSMg01no467_k03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:34 2005
         (281 letters)



>mm_chr4_34807320_34807996
          Length = 677

 Score =  520 bits (269), Expect = e-152
 Identities = 277/281 (98%), Gaps = 4/281 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgatgggggagaagatcacactttaaccaggaatgcctatttatgcattccctttctctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgatgggggagaagatcacactttaaccaggaatgcctatttatgcattccctttctctc 260

                                                                       
Query: 61  tatttaaatccaagccttatgtcctaaagaaggacttgagagcataacttgtatgctctc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||   | ||||
Sbjct: 261 tatttaaatccaagccttatgtcctaaagaaggacttgagagcataacttg---g-tctc 316

                                                                       
Query: 121 tttgttgttctttccaatgcagacccactgaataaatcttctttctctagtcaccattat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tttgttgttctttccaatgcagacccactgaataaatcttctttctctagtcaccattat 376

                                                                       
Query: 181 ttgtctaactgggctataggatgggtagctgcccctcacttgttaagagttgtcaaagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ttgtctaactgggctataggatgggtagctgcccctcacttgttaagagttgtcaaagat 436

                                                    
Query: 241 caggctctgaccctaccaactctggtatcaaaagttttgat 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 caggctctgaccctaccaactctggtatcaaaagttttgat 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 677
Length adjustment: 9
Effective length of query: 272
Effective length of database: 668
Effective search space:   181696
Effective search space used:   181696
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)