BAC Information

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BAC

Clone NameMSMg01-467K08
Chromosome4 (Build37)
Map Location 36,145,110 - 36,315,562
singlet/doubletdoublet
Overlap genenone
Upstream gene3110043O21Rik, LOC620559, LOC621227, Lingo2
Downstream geneLOC100042132, LOC545600, LOC621458
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467K08.T7 (MSMg01no467_k08.b1)MSMg01-467K08.TJ (MSMg01no467_k08.g1)
ACCAG551304AG551305
length746733
length of high quality
(start - end)
215 (73 - 287)240 (325 - 564)
definitionCHROMAT_FILE: MSMg01no467_k08.b1 PHD_FILE: MSMg01no467_k08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:35 2005CHROMAT_FILE: MSMg01no467_k08.g1 PHD_FILE: MSMg01no467_k08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,145,110 - 36,145,324)(36,315,323 - 36,315,562)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGAAAATGGGCGGAAT
TCTAAGGTTGTTCCCTGAAGCAGGCTGTGCTGAGTTCAATGCACTACGAA
TTATGTTACAGGTCCTTTGTTTTTATCTTCACATGAACATCCTCCCTAAG
ATGTTGCATTGATAAGGGTAACATCAGATATGGCTACAATGTGAGGCAGT
TAGTGGAAGTCATTTGTCTATTAAAATCAAAAGATACAATTTCAGATGTT
TTCTACTGAAGTATCTTTTCCAAGAAATAATATCTTAATACTGAGTGCTA
CAGCTGCTTATGACCTGTTATTTTAAAATACATCTTCACAACATGGGCAT
ACAGAGAAGTCTAAATTGAAACTTCTTCATAGAGCAATTTCTTTTGAGTC
CAACTGGCTTTGCTTTGCTACTGCTAAATGTAGACCAATTGCTTTACTAA
AAACAGAAAAAGAATAAGAAAGAAATATCTGTTCAATTCAATTCTTTTTG
AGATCTACTTTTGTTGTTTAGCTTGAAGATTAAATCCCTCTGCAACTATA
ATTTGCTTTGTTTCAAATAATATAGGTTCATTTGTTTTTTAGCTCCTCTC
TTTTTTCATACTTTGAACCTTTATCATTGAAATTCTTCTACTCAACTATG
TTTTTCCTCCTCTTGCCCCCATATTCTCTATCCACCTGGTTTGATTCATT
CCTATTTATTCTCATCTTTGGCTACCTCTATTGTATATTCTCATTT
ATGCAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCAGAAATTCTCTGAGCTCCTCTTTACATATGTAGTCTA
AGGCAGTAGGAAAAAAGTACAGAAATACGTGTACTCCTAGGAGCTTCCAG
GCCCATTTAATTAAAATGCCATGCAAGATATCCTTTTGGGAGTGTCACAG
GGAATACAGAAAATTTAGCAAGCTCCAAGAGGTGAGCTTGCAGAAGACTT
ACCTGTTCTACTGTGACATGAAACCTATTTCACTTTAGAAATTACTCATG
TAAATTAGACTTTCTTGTANNGTTCAGCAATAGATGTATGACCCAGTATG
TTCGATATATATCCATGTACCATTGGATATAAAACCTCACCTTTTATGTA
TAAAGAGTATACATTCTTGGGATAAGGAGGACTTTGAAAGTGTCTTCAAA
CAAGTCAAGTGAACAGCTGGATCTAGTGTCCTTACATACTTTATATTTAC
CTAGGGTTATATGCAATTTATGTGTTTTTATGATATTAGCTGTGCTTCCC
TAGAGATCCATGCTCCACAGTTCCTTTGACATATTCCACTCTGACCAACT
ACATGCTCTTCAATTGAGTCCAATTTTATTATCCCTAAATGACTATTTAC
TTTATAATATTTACAGGCAGGCAATGGTGTTTCCCTTGGTAACTTTCTTG
CCTTCTACCACTTAATTTTTGACTGTATATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_k08.b1 MSMg01no467_k08.b1 CHROMAT_FILE:
MSMg01no467_k08.b1 PHD_FILE: MSMg01no467_k08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:35 2005
         (215 letters)



>mm_chr4_36144910_36145524
          Length = 615

 Score =  408 bits (211), Expect = e-118
 Identities = 214/215 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggctgtgctgagttcaatgcactacgaattatgttacaggtcctttgtttttatcttcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggctgtgctgagttcaatgcactacgaattatgttacaggtcctttgtttttatcttcac 260

                                                                       
Query: 61  atgaacatcctccctaagatgttgcattgataagggtaacatcagatatggctacaatgt 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgaacatcctctctaagatgttgcattgataagggtaacatcagatatggctacaatgt 320

                                                                       
Query: 121 gaggcagttagtggaagtcatttgtctattaaaatcaaaagatacaatttcagatgtttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaggcagttagtggaagtcatttgtctattaaaatcaaaagatacaatttcagatgtttt 380

                                              
Query: 181 ctactgaagtatcttttccaagaaataatatctta 215
           |||||||||||||||||||||||||||||||||||
Sbjct: 381 ctactgaagtatcttttccaagaaataatatctta 415


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 615
Length adjustment: 9
Effective length of query: 206
Effective length of database: 606
Effective search space:   124836
Effective search space used:   124836
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no467_k08.g1 MSMg01no467_k08.g1 CHROMAT_FILE:
MSMg01no467_k08.g1 PHD_FILE: MSMg01no467_k08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:35 2005
         (240 letters)



>mm_chr4_36315123_36315762
          Length = 640

 Score =  456 bits (236), Expect = e-133
 Identities = 239/240 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagcaatagatgtatgacccagtatgttcgatatatatccatgtaccattggatataaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cagcaatagatgtatgacccagtatgttcgatatatatccatgtaccattggatataaaa 381

                                                                       
Query: 61  cctcaccttttatgtataaagagtatacattcttgggataaggaggactttgaaagtgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cctcaccttttatgtataaagagtatacattcttgggataaggaggactttgaaagtgtc 321

                                                                       
Query: 121 ttcaaacaagtcaagtgaacagctggatctagtgtccttacatactttatatttacctag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttcaaacaagtcaagtgaacagctggatctagtgtccttacatactttatatttacctag 261

                                                                       
Query: 181 ggttatatgcaatttatgtgtttttatgatattagctgtgcttccctagagatccatgct 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 260 ggttatatgcaatttatgtgtttttatgatattagttgtgcttccctagagatccatgct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)