Query= MSMg01no467_p08.b1 MSMg01no467_p08.b1 CHROMAT_FILE:
MSMg01no467_p08.b1 PHD_FILE: MSMg01no467_p08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:59 2005
(395 letters)
>mm_chr4_35995676_35996469
Length = 794
Score = 687 bits (355), Expect = 0.0
Identities = 382/391 (97%), Gaps = 1/391 (0%)
Strand = Plus / Minus
Query: 5 cttcagcttcctatttttcttccagatagaccgaaaacaatttttatcttaaatattaac 64
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 594 cttcagcttcctatttttcttccagatagaccgtaaacaatttttatcttaaatattaac 535
Query: 65 tttattcataaagaccatatgatgccaacaataatttgaatagatatgaaacattatgag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tttattcataaagaccatatgatgccaacaataatttgaatagatatgaaacattatgag 475
Query: 125 aagaatcggtaaatcagtgaatcagtatggaaaaccatagctaagcaggttctgggaagg 184
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 474 aagaatcggtaaatcagtgaatcagtgtggaaaaccatagctaagcaggttctgggaagg 415
Query: 185 tgtgatagtgagctggaacatacataaaatctcggtgaaggttgtccgtctacagctagg 244
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 414 catgatagtgagctggaacatacatacaatctcggtgaaggttgtccgtctacagctagg 355
Query: 245 ccttgtatacaagtataataaatcacatgtgtcataaagaaactgtaggatatcttggca 304
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 354 ccttg-atacaagtataataaatcacatgtgtcataaagaagctgtaggatatcttggca 296
Query: 305 agaatgcagctagggcagaggtaggaaaaacttgtctgatataattgacaaaagctggat 364
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 295 agaatgcagctagggcagaggtaggaaaaacttgtctaatataattgagaaaagctggat 236
Query: 365 ccatttgactgtacaggagaatttccaaaag 395
|||||||||||||||||||||||||||||||
Sbjct: 235 ccatttgactgtacaggagaatttccaaaag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 794
Length adjustment: 9
Effective length of query: 386
Effective length of database: 785
Effective search space: 303010
Effective search space used: 303010
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no467_p08.g1 MSMg01no467_p08.g1 CHROMAT_FILE:
MSMg01no467_p08.g1 PHD_FILE: MSMg01no467_p08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:59 2005
(530 letters)
>mm_chr4_35851500_35852429
Length = 930
Score = 1009 bits (522), Expect = 0.0
Identities = 528/530 (99%)
Strand = Plus / Plus
Query: 1 tcaggatctgtagcagcctgctctgtcaaaatcttcagtgaaagagtgaacaggaggttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaggatctgtagcagcctgctctgtcaaaatcttcagtgaaagagtgaacaggaggttt 260
Query: 61 tcaagtgctagtaagaattttaagattctagaattgatcttagaagcacccagagttcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaagtgctagtaagaattttaagattctagaattgatcttagaagcacccagagttcta 320
Query: 121 atatgtaattgttttatagaaccgaattttagtctttgagaaaatgaatgagatactttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatgtaattgttttatagaaccgaattttagtctttgagaaaatgaatgagatactttt 380
Query: 181 ctcctggagatgctggacatgtcagttaataagtaatgtgttgaaatgatgttcacccta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcctggagatgctggacatgtcagttaataagtaatgtgttgaaatgatgttcacccta 440
Query: 241 tgtttcgtgctaaaagcttcaggctgaggacatggcaaccctaacagctgtaataaatat 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgtttcgtgctaaaagcttcaggctgaggacatggcaaccctaacagctgtaataaatat 500
Query: 301 gacgccttcatcataatgccttttattgtcatgtatgccctatgtatgctttgtcgtccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacgccttcatcataatgccttttattgtcatgtatgccctatgtatgctttgtcgtccc 560
Query: 361 catccttcgccacctgtaattcctctatgtctccttatacatactcatgtgtgacacaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catccttcgccacctgtaattcctctatgtctccttatacatactcatgtgtgacacaca 620
Query: 421 gacatacacacacattcactatatatcagagagaagttttgttatttgtctttcagagtt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gacatacacacacattcactatatatcagagagaagttttgttatttgtctttcagagtt 680
Query: 481 ttcaaatcaactgattttctgcagggttctttcattctcttccttccttc 530
|||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttcaaatcaactaattttctgcagggttctttcattctcttccttccttc 730
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
