Query= MSMg01no468_o16.b1 MSMg01no468_o16.b1 CHROMAT_FILE:
MSMg01no468_o16.b1 PHD_FILE: MSMg01no468_o16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:18 2005
(436 letters)
>mm_chr4_117618174_117619009
Length = 836
Score = 774 bits (400), Expect = 0.0
Identities = 427/436 (97%)
Strand = Plus / Minus
Query: 1 acagtgaccaatggaaagaaacagaagaaactgaaatattgactgtgcctgcaatgtgag 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 acagtgaccaatgaaaagaaacagaagaaactgaaatattgactgtgcctgcaatgtgag 577
Query: 61 gcttgggccctacacttgggactcttccccaaggacccaacactaccctcagccacttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gcttgggccctacacttgggactcttccccaaggacccaacactaccctcagccacttct 517
Query: 121 gcctgccccacggcagtacaaacatcagagtttgcaaagggatagcgtgtgctcacctgt 180
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 516 gcctgccccacggcagtacaaacatcagagtttgcaaagggatagagtgtgctcgcctgt 457
Query: 181 tcccaggacacatgccctgcctcagcttacctactgctgcacagaagcaagaagttagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tcccaggacacatgccctgcctcagcttacctactgctgcacagaagcaagaagttagga 397
Query: 241 ggagccttttatgtgtgtgctcacgtgtgtgctcatgtgtataagagaccactcacacca 300
|||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ggagccgctcacgtgtgtgctcacgtgtgtgctcatgtgtataagagaccactcacacca 337
Query: 301 tactggaaatggggcactctgttagtcatctctccttccagaagactaaggagagaagca 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tactggaaacggggcactctgttagtcatctctccttccagaagactaaggagagaagca 277
Query: 361 aggctgtggcctgcccttcctctgcggtgcttgcagattcttggagggatttacaataag 420
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 276 aggctgtggcctgcccttcctctacggtgcttgcagattcttggagggatttacaataag 217
Query: 421 ctaattctccctagtt 436
||||||||||||||||
Sbjct: 216 ctaattctccctagtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space: 353129
Effective search space used: 353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no468_o16.g1 MSMg01no468_o16.g1 CHROMAT_FILE:
MSMg01no468_o16.g1 PHD_FILE: MSMg01no468_o16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:18 2005
(398 letters)
>mm_chr4_117475221_117476018
Length = 798
Score = 719 bits (372), Expect = 0.0
Identities = 390/398 (97%), Gaps = 4/398 (1%)
Strand = Plus / Plus
Query: 1 agagaaccccctgactctgcctcctacatgctgcggtttgaggcacgagccaccacctcc 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 agagaaccccctgcctctgcctcctacatgctgcggtttgaggcacgagccaccacctcc 264
Query: 61 tggctcattctgtttgtttgtctgtctgtttgtttttttgagacaaggtttccctatgta 120
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 265 tggctcattctgtttgtttgtctgtctgtttg----tttgagacaaggtttccctatgta 320
Query: 121 accctagctagcctggaaccctttatgtagattaggctggccttgaactcacatgatcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accctagctagcctggaaccctttatgtagattaggctggccttgaactcacatgatcca 380
Query: 181 cctgcctttgcctcttgagttctagaattgaaggtatacacccccaggcccagcctctca 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgcctctgcctcttgagttctagaattgaaggtatacacccccaggcccagcctctca 440
Query: 241 ttcttttccttgtcggacttgtggggcagttggggatctccgttcatcttgtcaccctcc 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 ttcttttccttgtcggacttgtggggcagttggggatctccgttcatcttgtcaccttcc 500
Query: 301 accttttcccatcctgctctgtgcctcccagtacagcgcccatcaacctctctttctaac 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 accttttcccatcccgctctgtgcctcccagtacagcgcccatcaacctctctttctaac 560
Query: 361 agcagcctgtgtggggttggcttcacttccttgtcagg 398
||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agcagcctgtgtggggttggcttcacttccttgtcagg 598
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 798
Length adjustment: 9
Effective length of query: 389
Effective length of database: 789
Effective search space: 306921
Effective search space used: 306921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
