BAC Information

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BAC

Clone NameMSMg01-469B01
Chromosome4 (Build37)
Map Location 25,587,230 - 25,587,392
singlet/doubletsinglet
Overlap geneFut9
Upstream geneKlhl32, 1110007M04Rik, C230012O17Rik, Gpr63, Fhl5, 1810074P20Rik, Prdx6-rs2, LOC665019, LOC625732
Downstream geneLOC100040780, Hn1-ps1, Manea, Bhmt-ps1, LOC665079, Gng2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469B01.T7 (MSMg01no469_b01.b1)MSMg01-469B01.TJ (MSMg01no469_b01.g1)
ACCAG552390AG552391
length764782
length of high quality
(start - end)
515 (48 - 562)169 (79 - 247)
definitionCHROMAT_FILE: MSMg01no469_b01.b1 PHD_FILE: MSMg01no469_b01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:30 2005CHROMAT_FILE: MSMg01no469_b01.g1 PHD_FILE: MSMg01no469_b01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCTGCTATGATCAGTACTCCATTTTCAATTGGGTTATTTAGTA
TGATGATGTCCCGTTTTGTGAGTTCTTCATATATTTTACATATTAGTCCT
GTATCAGATGTGGAGTTGGTAAAAATCTTTCCTCATTGTGTAGGCTGCCT
TTTTGTACTACTGATGATGTGTTATGCCTTACAAAGCTTTTTAGTTTCAT
GAGGTCCCATTTATTAACTGTCTTCCTGCCTATGCTATCAGTGCTGTTTA
GGAAGCTGTCTCTTGTGCCAATGTGTTCAAAGCTATTCCCTACTTTTGCT
TTTATTGGGTTCAGTGTATTTGTTTTTATGTTGAGGACTACGATGCACTT
GGACTTCAAATTTGTATAAGGTAATAAGGAAATCTTTGCATTCTTCTAAA
AGCAACAACACAATTATACCAGCACCATTCGTTGAAAAGGATTTCCTCTT
TTTTTTTTTTAATTGTGTATTTCTGGCTTCTTTATCAAGCATCAGATTTC
CATAGGTGTGTGGATTTATATCTTGATTTTCAATTTCATTCTCTTGTTCA
AATGTGCCTGGCCTTATGCCCATAAGATGTTGTTTTGAGTTATTACATAG
TTTGACTACTCCCCATGCGATACCTCCGGGACTTTCCTTTATGGCTTATA
CTGCTCTACTCTATTTTGTCTTCGCCTTTTTTCTTTCTTTGTTACCAACC
CCCTCCTACTCTAT
CCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAAACTGTAACCTTTTTTACA
TTTCAGAGTTAGAGTTAATAATAAAGATAGGTGCTACTAGGACCTATCCT
TTAATCGCCATAAAGTTTAAAATTCCTTATTGTTTTTACAAATATGAAGG
ACATAGAGGTAGTAAAGGAAGGGACACAAGAGGGACTGGAGGGAGTNAAG
AAGNGNNGGGNNTTATTAAAGTCTTTAATTGAAATGCCATTTTCGAAAAT
CTTCGCCCATCCCTTTTTCCTTTCCCTCTTTATTTTCCTCCCTCTCTTCT
CTTCCCCCTTTCTTCTCCTTCTGCTTGGCCGCCGCGGTTCTCTTCCCACT
TTTGGCCGATTTTCTTTTCTCTCCCTAATCTCATTCCTTTACCGTATTAC
GGCATCCACAAGTTCTTCCCGAACTCCTTTCTTCCCCGCGTTCTATACTC
TGATTTCGCCTCTGTCTTTCCTAACTGCTAACTTGATTCGTAGTCCCCTC
CTCTCTTTTCATATACACATTTACACTTCCCTCCCTTCTATCCTCCTACC
CCCTATTCCCATATTCCTTTTTTACCCCGCTTTTTTTTCCCCTTTTCCCC
CTTCCCCTATCCCCCGTTTCTTTTCTTTTCCCCTTCTCTCCCCGCTGTTT
TTCGTTTCCCGCCTTCCCTTCCTTTTTATTTTTTTATCCGTTTTACCGCT
TTTCCGCCGCTTTCTTTTTTCCCTTCGATGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_b01.g1 MSMg01no469_b01.g1 CHROMAT_FILE:
MSMg01no469_b01.g1 PHD_FILE: MSMg01no469_b01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:30 2005
         (169 letters)



>mm_chr4_25587030_25587594
          Length = 565

 Score =  238 bits (123), Expect = 1e-67
 Identities = 155/167 (92%), Gaps = 4/167 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaaactgtaaccttttttacatttcagagttagagttaataataaagataggtgctact 60
           ||||||||||||||||| || ||||||||||||||| |||||||||||||||||| ||||
Sbjct: 201 ctaaactgtaaccttttctatatttcagagttagag-taataataaagataggtgatact 259

                                                                       
Query: 61  aggacctatcctttaatcgccataaagtttaaaattccttattgtttttacaaatatgaa 120
           ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 260 aggacatatcctttaatcgccataaagtttaaaattccttattgattttacaaatatgaa 319

                                                          
Query: 121 ggacatagaggtagtaaaggaagggacacaagagggactggagggag 167
           || |||||||||||   |||||||||||  |||||||||||||||||
Sbjct: 320 gggcatagaggtag---aggaagggacatgagagggactggagggag 363


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 565
Length adjustment: 8
Effective length of query: 161
Effective length of database: 557
Effective search space:    89677
Effective search space used:    89677
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)