BAC Information

Click to search

BAC

Clone NameMSMg01-469B13
Chromosome4 (Build37)
Map Location 73,720,029 - 73,720,391
singlet/doubletsinglet
Overlap geneFrmd3
Upstream geneOTTMUSG00000001246, LOC100039726, LOC667722, LOC623115, OTTMUSG00000000281, OTTMUSG00000000280, OTTMUSG00000000282, OTTMUSG00000000283, Gm428, Rasef, LOC667768, LOC545637, LOC623272, OTTMUSG00000014862, OTTMUSG00000004010, 2310002L09Rik
Downstream geneLOC100039774, Jmjd2c, LOC100040258, LOC100039814
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469B13.T7 (MSMg01no469_b13.b1)MSMg01-469B13.TJ (MSMg01no469_b13.g1)
ACCAG552412AG552413
length1,032782
length of high quality
(start - end)
---363 (78 - 440)
definitionCHROMAT_FILE: MSMg01no469_b13.b1 PHD_FILE: MSMg01no469_b13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:33 2005CHROMAT_FILE: MSMg01no469_b13.g1 PHD_FILE: MSMg01no469_b13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACGCTCTTACTATATCTTATAAATCATCGCTGTTCTTCCGCGCTAGTGGG
ACTGCCTCCTTNTTTTTCTCTCCTTGTTGCCGCGTTAAGATATAAACCAC
TACATGTATATCTCTCATAATCTAACTGCTATTACGAGGCACCCGATGTA
GGTGTAGCACAGACATACAATATTACCATTTTATGACCACATGTACAAAA
AAACATGTAGCCTCTCTCGTTTGGGCTTTGTACTATTGTCCATGTAAATT
TTGTTAACACTCCTTACTTTTCCTTTCACATCACATAGTCTCGTTGGCCG
CGTCGCGATTTGCCGTAAGGCGGAGTTCTTATATTTTGCATGACCATTCG
ACTATGTGCGTTTGCTCAAAATACAAGGCCGACTGTACTAGCGAATCATA
TTTTTGCGTGTCTGAGAGGAACGAGGATGCCGGATTCTGAGGCGCGAACT
TATTTATCAATCTGAGCTCCTGCCGTACTCGTATGTAAGCCCACTAGTGT
GCGCGAGTGTAGAGGGGTTGTGCTTACGCCACACTTACATCCTGACCTCT
TCGTAGCGAGTTTTGACCATCATCTCCAAGCTCGTATACGAGTCATATTG
ACTACACGAACCACTGTTTTCACATACTTAAAGAAGCCCGCGATGTACGT
CTACCACGACTACACGAGGTATTTATTGTATCCGCGGCGCCATATATGTT
GGATACGGCTTCGACACTCGTATGTTCGTGCGACGTCTACTGGAGTTTCC
GTTTTGTCCGGCGCCTGCATTTGTTCCTACCGTAACCTAACTACATATAC
TATTAGCGCCGCATCACTACTCTCGCGTAATCTATTACGTCTTACGCCGA
TTGTTGCACCTATTATTTTTGCGCGTGCGTATACCTTTTAGAGAAACGTC
TCTGGCGCAGAGAGATGATGCAAGTTAGCAGCGTAAATGNCGCGCGTTAT
CTGATATTTTTGTGTATCATTGCCCCGCTATATATCTGTGTAGCGCATTC
GTTTCTCCTTCCCCAACCACACGTATTGTAAT
CGATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTATGGGGACCCAGAGAAGCAAA
GGGTAAGAACACATCTTGATCTTCAACCTATGGGCTTAAGGGAAGGCCTG
GAATGCTGGGTACTATGGGATCCTTTCCAGAAACCTTATGGTGCCTTTAT
TCTAACAGATTGTTGACCTGAGAAATAAAGCAACTGGTGGGTGTTTAACT
GTAAGGAGTGGGAACACGAAAAAGTCTTTCTCGGAATGCTGGGCTCACAT
GAAGAAAAGTGGGAATTGCTCCTTGCTCTTTGAATTTAGATTTCTCAGAG
TAGTTGCATAGAATCCAATTATAAAGAAACACAACCACCATATTAAGAAC
CTACTGGCAGAGGTAGGGGATAAACTTGGTAGAAGTTGGGTGTTTTTATG
GCGCGATGTTCATATCTTCACTCTTGTTCCCCCCCCCTCTTTTACTCAAT
TTCTCCCGCTTTCTTTTCTCTCCTTTTTCCTCCTTCCCTTTCCCCCCCCA
CCTTTCCCCCTCTTAACTTTTTCTTCTCCCTTTTTTTTTATCTTCCTTTC
CCCTCCATCCCTTTTTTATTTTCTTCCCCCCTTTTTTTTTCCCTTTTCCC
CACTACCCCTCTACTCCCCTTTTCTTATTCATGCCCACTTCCTCCCCCCC
TATCTTCTTATTCCCCTTTCCTTCTATTTTTTTTTTATTCCACTTCCTCC
CTTTCCCGCGCTCTTTTTTCTTCCTCTCTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_b13.g1 MSMg01no469_b13.g1 CHROMAT_FILE:
MSMg01no469_b13.g1 PHD_FILE: MSMg01no469_b13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:33 2005
         (363 letters)



>mm_chr4_73719829_73720591
          Length = 763

 Score =  663 bits (343), Expect = 0.0
 Identities = 358/363 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatggggacccagagaagcaaagggtaagaacacatcttgatcttcaacctatgggctt 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctatgtggacccagagaagcaaagggtaagaacacatcttgatcttcaacctatgggctt 260

                                                                       
Query: 61  aagggaaggcctggaatgctgggtactatgggatcctttccagaaaccttatggtgcctt 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagagaaggcctggaatgctgggtactatgggatcctttccagaaaccttatggtgcctt 320

                                                                       
Query: 121 tattctaacagattgttgacctgagaaataaagcaactggtgggtgtttaactgtaagga 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 tattctaacagattgttgacctgagaaataaagcaactggtgggtgtttaactggaagga 380

                                                                       
Query: 181 gtgggaacacgaaaaagtctttctcggaatgctgggctcacatgaagaaaagtgggaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgggaacacgaaaaagtctttctcggaatgctgggctcacatgaagaaaagtgggaatt 440

                                                                       
Query: 241 gctccttgctctttgaatttagatttctcagagtagttgcatagaatccaattataaaga 300
           || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gccccatgctctttgaatttagatttctcagagtagttgcatagaatccaattataaaga 500

                                                                       
Query: 301 aacacaaccaccatattaagaacctactggcagaggtaggggataaacttggtagaagtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacacaaccaccatattaagaacctactggcagaggtaggggataaacttggtagaagtt 560

              
Query: 361 ggg 363
           |||
Sbjct: 561 ggg 563


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 763
Length adjustment: 9
Effective length of query: 354
Effective length of database: 754
Effective search space:   266916
Effective search space used:   266916
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)