BAC Information

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BAC

Clone NameMSMg01-470C12
Chromosome4 (Build37)
Map Location 35,167,967 - 35,168,210
singlet/doubletsinglet
Overlap gene3110043O21Rik
Upstream geneLOC100039220, LOC665361, LOC665367, 2700059D21Rik, Orc3l, Rars2, Slc35a1, 1700003M02Rik, Gm136, 1810030N24Rik, Zfp292, Cga, Mobkl2b, Ifnk, LOC620559
Downstream geneLOC621227, Lingo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470C12.T7 (MSMg01no470_c12.b1)MSMg01-470C12.TJ (MSMg01no470_c12.g1)
ACCAG553224AG553225
length747746
length of high quality
(start - end)
261 (96 - 356)245 (72 - 316)
definitionCHROMAT_FILE: MSMg01no470_c12.b1 PHD_FILE: MSMg01no470_c12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:58 2005CHROMAT_FILE: MSMg01no470_c12.g1 PHD_FILE: MSMg01no470_c12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTATACCTCCTGTCGCTAAACGACTCCTACTTCCACAACATCCGCGGAA
TTCAACATTTTTCACAATCACAGGGAAGATAATGAGTTCAAGGCCAGCCT
GAACTATGTAGCAAGTTCAAGTCCAGTCTGGGGTACATGGTAAGACCTTG
TCTCAAAAACAAAAGTGTCAAAAATAAAGTCCAGTCAACCAACCAACCAA
CCAGCTAGCCAGTCAGCCAAACAACCATCCATCCATCCATCCATCCATCC
ATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCAACCAACCTA
CCATCCATCCATCCATCTTTTTTTCCATCCATCCATCCATCCATCCATCC
ATCCATCTAACCAACCAACCAGACACACAACAAACTCCCAAGAGGAGTCT
GAAAGACTTGCTTTACACCTTTAAAATCTTCCCAAGTCTCACTCAGTGCT
CCCATTTGCAAAATAACCCACACCTATTTTTCTACCAATGCTGGGAGAAA
ATCAGTGAGTCCTGTATAACATATAACCCATAATGTATACTCAAGGCATG
GCAAACATCATTACCATGCTAACTGCATAACACGACACGTACACGTTACT
CACTCCGCCTTCGGAACCCCTCGTTTTAGACATGCCTCCGACATCTACCA
TCCTTCTCTTATTTCATCGATAATACACCTCTGTTAACCCCCCTTTCCCA
CCGTCCTGTTCCTCACGCCAAACCTCCATCCTGTTTTGCCCTTCACC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTCCCCGGGGAGTAGGAGGACTCTTTGAG
GATGGGCTGCATTTATAGCTAAACAACGCAACATGACCTTTAGTCCTTAT
AGATAGCCTAGAGATGAGACTAAATAAAAGAAATGGCACATAATGCTTTA
AGTTTCCCAATCAGCTTAAAAGCTTTTCCTATAAATCTTTAAGATTATGC
TCTGGGGCTCAATACTGCTTCAAGAAGGGCTTTTCTTTTGTATTTAGAAT
TATTCACCTTTTTAATTTTTTTATAAAATGGAATAGAAATATGTTTGCAA
CATAATTTTATGACTATGTGTTTATTTCGCGTGTTCTGTGGGCCTGCAGT
TTGCTGCTGTTAATGAGGACAACAGTGGCACCAATACAGTTTCCACTCAG
ATTACATTCTCTGTTCCCTTTCTGAAAGCTGCCCTCTCCACTGGGCCCAA
CAGAGTCAGTATCTTAAACCAGCTGTACAACTTATATAACCATGGCCTCT
TCAGACTATTTAATTGATATATTTTATTCCGCACCTACCATCTACGTGAA
TTTCTGACATTAACAATGACCATTTAAAATCTCCACTTAAACTATCCCCC
TATAGTTAATTGCCTTTGCCAGTTCCGTAACTCTTACTCCTACATAATGC
GCTCACTTTTCCTCCCTAACTATTCCAAGTCCCTCTCCTCCTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_c12.g1 MSMg01no470_c12.g1 CHROMAT_FILE:
MSMg01no470_c12.g1 PHD_FILE: MSMg01no470_c12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:58 2005
         (245 letters)



>mm_chr4_35167767_35168411
          Length = 645

 Score =  449 bits (232), Expect = e-131
 Identities = 241/244 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctccccggggagtaggaggactctttgaggatgggctgcatttatagctaaacaacgcaa 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 444 ctccccggggagtaggaggactctttgaggatgggctgcatttaaagctaaacaacgcaa 385

                                                                       
Query: 61  catgacctttagtccttatagatagcctagagatgagactaaataaaagaaatggcacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 384 catgacctttagtccttatagatagcctagagatgagactaaataaaagaaatggtatat 325

                                                                       
Query: 121 aatgctttaagtttcccaatcagcttaaaagcttttcctataaatctttaagattatgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aatgctttaagtttcccaatcagcttaaaagcttttcctataaatctttaagattatgct 265

                                                                       
Query: 181 ctggggctcaatactgcttcaagaagggcttttcttttgtatttagaattattcaccttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctggggctcaatactgcttcaagaagggcttttcttttgtatttagaattattcaccttt 205

               
Query: 241 ttaa 244
           ||||
Sbjct: 204 ttaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)